MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene ytpR (MPN663)
Name 
ytpR
Stable ID 
MPN663
Location 
786558 - 787262 -
Sequence 
    1  ATGCGTTACG GTTTTTTTGA TATTTCTCAG GACTTTATCA CCATTTTTTG TCCCAAGAAA
   61  ACACTTAAGA ACTGTATGTT TGGTTTAATT GGTAGCCGCA CGCAAGCTAC TTTGCGCCAA
  121  GAAAAGAACC AGAACTTTAG CTTCTTTGTC AATGAAGCCA ATGAGATTGC TGGGTTTAAC
  181  TTCTTTGACA TTAAAAAGAG CTTTCGCAGG GGATTAATTT CCCATCACTT TACCGCAGGG
  241  TTGAATTACC CTTCTTTGAA GTTGGTCAAA AAGATTAGTG AGCTGTTGAA CTATGATTTA
  301  ACACCCTTAG CCAAAAAGGT ACCCTTTGTG GTTTGTGAGG TCATTTCGGC CATTCCGATT
  361  CCCAACACTC ATTTGAAAAG GTGTAAGGTC AACACTGGTT CCAATAAGTC CTTGGATGTC
  421  GTGTGTGGGG CGGATAATGT TCGGGTTGGC CTTAAAACTG TTTTAGTCCA TGTTGGTGGT
  481  GTTTTACCTG ATGGCACGAT TATCAAGAAG GCTAAAATTG CGGGGTATGA TTCCATGGGA
  541  ATGCTCTGTT CGGAAAAAGA GCTCAATTTA AAACCTAAAA ATCAGGGTAT AATTGAAATT
  601  AAGTCGCACA TCAAAATAGG CAAAAGTTTC CTTGATGTTT ACTTAAATAA TAGTGAAAAA
  661  TTCAGTGCAT GAGTAAGTAC CAAAAAAAGA GTGACGGGGA ACTAA
Download Sequence
Operon 
OP313
Operon location 
786672 - 789400
Protein (mpn663)
Name 
Putative tRNA-binding protein ytpR
Stable ID 
Mpn663
Molecular Weight 
25740
Isoelectric Point 
10
Localization 
Cytoplasm
Comment tRNA binding protein, homology to ytpR; similar to Phe-tRNA synthetase (beta subunit)
Sequence 
MRYGFFDISQDFITIFCPKKTLKNCMFGLIGSRTQATLRQEKNQNFSFFVNEANEIAGFNFFDIKKSFRRGLISHHFTAG
LNYPSLKLVKKISELLNYDLTPLAKKVPFVVCEVISAIPIPNTHLKRCKVNTGSNKSLDVVCGADNVRVGLKTVLVHVGG
VLPDGTIIKKAKIAGYDSMGMLCSEKELNLKPKNQGIIEIKSHIKIGKSFLDVYLNNSEKFSAWVSTKKRVTGN
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation NcmFGLIGSR 24 34 M
Oxidation IAGYDSmGMLcSEK 173 187 M
Oxidation IAGYDSmGmLcSEK 173 187 M
Oxidation IAGYDSmGMLcSEk 173 187 M
GENE/PROTEIN ytpR (Domains Overview)
Click on the features to jump to domain info

 ExportIMG
Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
103-211 PS50886 (IPR002547) tRNA-binding domain Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0000049'>'tRNA' == '' ? '': 'tRNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0000049)

0
103-216 SSF50249 (IPR016027) Nucleic acid-binding, OB-fold-like 8.40002e-28
108-213 G3DSA:2.40.50.140 (IPR012340) Nucleic acid-binding, OB-fold 6.2e-34
110-208 PF01588 (IPR002547) tRNA-binding domain Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0000049'>'tRNA' == '' ? '': 'tRNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0000049)

0.0000000000087
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
100 212 112 - Caulobacter crescentus NA1000 36 149 0.000000000000005 35.3448 182
101 216 115 - Lactococcus lactis subsp. lactis KF147 38 158 7e-20 39.3443 222
40 210 170 - Lactococcus lactis subsp. lactis KF147 28 200 3e-19 32.2222 216
13 210 197 - Bacillus subtilis subsp. subtilis 1 199 0.000000000000002 33.6449 188
121 193 72 - Bacillus subtilis subsp. subtilis 58 131 0.00000000002 43.2432 153
13 210 197 - Bacillus subtilis subsp. subtilis 1 199 0.000000000000002 33.6449 188
121 193 72 - Bacillus subtilis subsp. subtilis 58 131 0.00000000002 43.2432 153
121 207 86 - b1713 Escherichia coli 57 144 0.000000000000003 45.4545 184
6 231 225 - MG449 Mycoplasma genitalium 2 225 <1e-50 71.6814 867
125 198 73 - Rv1650 Mycobacterium tuberculosis 68 141 0.000000001 37.8378 135
54 214 160 - MCAP_0641 Mycoplasma capricolum subsp. capricolum 50 203 7e-22 34.9693 236
98 210 112 - MCAP_0384 Mycoplasma capricolum subsp. capricolum 37 143 0.00000000000005 36.2832 168
108 211 103 - MMOB5310 Mycoplasma mobile 83 183 0.000000009 34.2857 122
54 214 160 - MSC_0688 Mycoplasma mycoides subsp. mycoides SC 50 203 5e-18 33.1288 203
98 188 90 - MSC_0595 Mycoplasma mycoides subsp. mycoides SC 37 124 0.000000000005 36.2637 151
85 197 112 - LIC_13219 Leptospira interrogans serovar Copenhage 4 133 0.000002 30.303 107
13 210 197 - MYCGA2280 Mycoplasma gallisepticum 3 198 5e-19 30.5419 211
12 216 204 - MYPE9410 Mycoplasma penetrans 1 195 2e-23 33.0097 251
140 207 67 - MYPE9260 Mycoplasma penetrans 77 150 0.00000006 35.1351 117
87 198 111 - Mycoplasma pulmonis 72 183 0.0000004 28.6957 108
External IDs
COG 
COG0073R
Gene ID 
877008
GI 
13508402
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR008994|Nucleic acid-binding, OB-fold
InterPro 
IPR012340|Nucleic acid-binding, OB-fold, subgroup
InterPro 
IPR002547|t-RNA-binding region
Old MP number 
MP179
Pathway 
Translation
Pfam 
PF01588
PID 
g1673842
RefSeq 
NP_110352.1
Swiss-Prot protein ID 
Y663_MYCPN
phylomeDB tree 
Y663_MYCPN
UniProt 
P75128
Transcription
IMAGE BROWSERS

OPERON OP313 (Genomic Overview)
Region:786672-789400

Click on the features to jump to a different MyMpn page

 ExportIMG MyGBrowser GBrowse
STRING image

STRING of Mpn663STRING legend

Site hosted by:
Copyright 2010-16, Luis Serrano group. All rights reserved.
All data provided for download in the MyMpn database is free to use. Upon doing so, please cite the original data source and the MyMpn database
CONTACT US