MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene rnj (MPN621)
Name 
rnj
Stable ID 
MPN621
Location 
747742 - 749427 -
Sequence 
    1  ATGGCTAAAA TTAACTTCTT TGCCTTCGGT GGTCAGGACG AGAGGGGCAA GAATTGTTTT
   61  GTTCTCGAAA TCAATAACGA CGTTTTTATT TTTAACGTTG GTAGTTTGAC ACCAACAACC
  121  GCTGTTTTAG GGGTCAAAAA GATCATCCCT GACTTTAGTT GGATCCAGGA AAACCAGGCC
  181  CGCATTAAGG GCATCTTTAT CGGTAATCCA GTAACGGAAA ACATTGGTTC GCTGGAGTTC
  241  TTATTCCACA CCGTTGGTTT CTTTCCGATT TACACCAGTA CGATTGGCGC TGTGGTTATT
  301  AAAACTAAGA TCCACGAAAA CAAGCTCAAT ATTCCCCATG ACGAGTTGGA AATCCACGAG
  361  CTTAAACCGT TAGAAACGGT CAAGATCGGG CACCATAACA TTACGCCCTT TAAGGTATCG
  421  AGTTCGATTC CTTCCTCGTT TGGCTTTGCG CTCCACACTG ATGATGGGTA CATTGTCTAT
  481  GTCGATGACT TCATTGTGCT CAATGATAAG AACATCGCCT TTGAAAACCA ACTCAATCAG
  541  ATTATTCCCC AAGTAGCGAA CAAGACCCTT TTGTTAATTA CTGGAGTTGG TCTAGTGGGA
  601  CGTAACACTG GTTTTACAAC CCCTAAGCAC AAATCCTTGG AACAACTCAA CCGCATTATT
  661  GCCTCCGCTA AGGGTCGGGT ATTTGCTGCT TGTTATGATT CCAACGCTTA CAGTGTGATG
  721  ACCTTGGCCC AAATTGCACG GATGCAAAAC CGCCCCTTTG TCATCTACTC CCATTCATTT
  781  GTCCACCTCT TCAACGCGAT TGTGCGCCAA AAGCTGTTTA ACAACACCCA CTTAAACACT
  841  ATTTCGATTG AAGAGATTAA CAACTCCACA AACGCCATTG TTGTTTTAAC CGCGCCACCA
  901  GATAAGTTGT ATGCCAAGCT GTTTAAGATT GGTACTAATG AGGATGAACG GGTACGGTAT
  961  CGCAAGACCG ATAGCTTTAT CTTCATGATT CCCCGCATAG CTGGGTATGA AGAGTTGGAA
 1021  GCACAAATCT TGGACGATGT CGCGCGTAAT GAGGTGAGTT ACTACAACTT GGGTCGGGAA
 1081  ATCTTGTCGA TCAATGCATC GGATGAAGAC ATGAAGTTTT TAGTAACTTC CTTAAAACCT
 1141  AAGTACATTA TTCCCACATC CGGTCTGTAC CGTGACTTCA TTAACTTTAC CATGGTAATG
 1201  AAGCAAGCTG GTGTGGAACA AAGTCAGGTC TTAATTCCCT TTAATGGTGA AGTCCTAGCC
 1261  ATTAACCACA AGCAAATTGA CAACAAAAAA CGGGAATTAA AGCTCAACCC TAAGTGTGTT
 1321  GACTCCGCTG GTTTGCAGGA AATAGGGGCC AGCATCATGT TTGAGCGTGA TCAGATGTCT
 1381  GAAGCGGGTG TGGTTACCAT CATCATCTAC TATGACTCCA AGAAGAGTGA GTTCCTAAAC
 1441  GAAATTACCT ATTCCTTTTT AGGAGTTAGC CTAGATAGTA ACAATCAGGT TAAACTCAAG
 1501  ACCAAAATGG AAGAGTTAAT TCGCAAACAA ATTAACGACA TTAAGGACTT TACGACAATT
 1561  AAGCGACGTT TAGGCAAAGA CACATCGAAG GAACTCAAGG TTTCTATTAA GCGAGCTGTC
 1621  ATGAATTTAT TTACCAAAAT GACTGCTAAA GCACCACTAA TCCTGTCAAC TATTATTTCT
 1681  ATTTAG
Download Sequence
Operon 
OP378
Operon location 
742360 - 747710
Protein (mpn621)
Name 
Probably non-catalytic ribonuclease J1
Stable ID 
Mpn621
Molecular Weight 
61710
Isoelectric Point 
9
Localization 
Cytoplasm
Comment Catalytic residues are nor conserved
Sequence 
MAKINFFAFGGQDERGKNCFVLEINNDVFIFNVGSLTPTTAVLGVKKIIPDFSWIQENQARIKGIFIGNPVTENIGSLEF
LFHTVGFFPIYTSTIGAVVIKTKIHENKLNIPHDELEIHELKPLETVKIGHHNITPFKVSSSIPSSFGFALHTDDGYIVY
VDDFIVLNDKNIAFENQLNQIIPQVANKTLLLITGVGLVGRNTGFTTPKHKSLEQLNRIIASAKGRVFAACYDSNAYSVM
TLAQIARMQNRPFVIYSHSFVHLFNAIVRQKLFNNTHLNTISIEEINNSTNAIVVLTAPPDKLYAKLFKIGTNEDERVRY
RKTDSFIFMIPRIAGYEELEAQILDDVARNEVSYYNLGREILSINASDEDMKFLVTSLKPKYIIPTSGLYRDFINFTMVM
KQAGVEQSQVLIPFNGEVLAINHKQIDNKKRELKLNPKCVDSAGLQEIGASIMFERDQMSEAGVVTIIIYYDSKKSEFLN
EITYSFLGVSLDSNNQVKLKTKMEELIRKQINDIKDFTTIKRRLGKDTSKELKVSIKRAVMNLFTKMTAKAPLILSTIIS
I
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation mQNRPFVIYSHSFVHLFNAIVR 248 270 M
Oxidation YRKTDSFIFmIPR 320 333 M
Oxidation KTDSFIFmIPR 322 333 M
Oxidation TDSFIFmIPr 323 333 M
Oxidation TDSFIFmIPR 323 333 M
Oxidation EILSINASDEDmK 360 373 M
Oxidation EILSINASDEDmKFLVTSLKPK 360 382 M
Oxidation YIIPTSGLYRDFINFTmVmK 382 402 M
Oxidation DFINFTmVmK 392 402 M
Oxidation DFINFTmVMK 392 402 M
Oxidation DFINFTMVmK 392 402 M
Oxidation LKTKmEELIR 499 509 M
Oxidation LKTKmEELIRK 499 510 M
Oxidation TKmEELIR 501 509 M
Oxidation AVmNLFTK 539 547 M
Oxidation AVmNLFTk 539 547 M
Oxidation mTAKAPLILSTIISI 547 562 M
GENE/PROTEIN rnj (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-286 SSF56281 (n.a.) NULL 0.00000000000034
2-169 G3DSA:3.60.15.10 (n.a.) NULL 0.000000000048
4-559 TIGR00649 (IPR004613) Ribonuclease J Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'hydrolase' == '' ? '': 'hydrolase';'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0046872'>'metal' == '' ? '': 'metal'; 'ion' == '' ? '': 'ion'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0046872)

0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
1 558 557 - MAG6810 Mycoplasma agalactiae 1 553 <1e-50 23.9243 460
1 480 479 - MAG7120 Mycoplasma agalactiae 1 483 5e-24 23.6948 258
1 481 480 - MARTH_orf128 Mycoplasma arthritidis 1 480 5e-25 22 266
1 561 560 - MARTH_orf674 Mycoplasma arthritidis 1 552 <1e-50 25.4833 524
6 561 555 - Caulobacter crescentus NA1000 11 559 7e-17 19.4107 202
1 546 545 - MCJ_002550 Mycoplasma conjunctivae 1 547 <1e-50 28.1362 596
6 561 555 - MCJ_006640 Mycoplasma conjunctivae 10 557 4e-28 22.0539 293
1 476 475 - MHO_3380 Mycoplasma hominis 1 476 9e-24 20.2454 255
1 561 560 - MHO_3690 Mycoplasma hominis 1 551 <1e-50 26.7826 541
1 559 558 - Lactococcus lactis subsp. lactis KF147 1 550 2e-26 21.7163 281
3 560 557 - Lactococcus lactis subsp. lactis KF147 11 557 8e-35 22.7273 355
4 561 557 - Bacillus subtilis subsp. subtilis 9 555 7e-36 22.1254 368
7 561 554 - Bacillus subtilis subsp. subtilis 15 558 9e-32 23.0089 333
4 561 557 - Bacillus subtilis subsp. subtilis 9 555 9e-36 22.1254 367
7 561 554 - Bacillus subtilis subsp. subtilis 12 555 1e-31 23.0089 331
2 526 524 - Rv2752c Mycobacterium tuberculosis 14 539 0.000000000000001 19.8905 192
7 560 553 - MG139 Mycoplasma genitalium 19 567 4e-30 22.5577 309
1 561 560 - MG423 Mycoplasma genitalium 1 561 <1e-50 83.6007 2536
7 479 472 - MCAP_0623 Mycoplasma capricolum subsp. capricolum 64 535 3e-37 23.0616 373
1 558 557 - MCAP_0255 Mycoplasma capricolum subsp. capricolum 1 552 <1e-50 29.2035 665
1 561 560 - MS53_0647 Mycoplasma synoviae 1 557 <1e-50 24.6127 477
1 508 507 - MS53_0542 Mycoplasma synoviae 1 505 3e-20 21.4015 225
6 561 555 - MHP7448_0092 Mycoplasma hyopneumoniae 7448 10 557 5e-27 20.8113 284
1 554 553 - MHP7448_0009 Mycoplasma hyopneumoniae 7448 1 555 <1e-50 26.1017 518
1 517 516 - MMOB6210 Mycoplasma mobile 1 517 <1e-50 26.5152 540
1 559 558 - MMOB6180 Mycoplasma mobile 1 552 1e-30 22.8669 314
7 481 474 - MSC_0670 Mycoplasma mycoides subsp. mycoides SC 63 536 1e-37 23.4086 377
1 558 557 - MSC_0300 Mycoplasma mycoides subsp. mycoides SC 1 552 <1e-50 29.5053 669
1 561 560 - MYCGA0830 Mycoplasma gallisepticum 18 591 <1e-50 39.8955 1092
7 472 465 - MYCGA0200 Mycoplasma gallisepticum 18 484 5e-33 22.9474 336
1 558 557 - MYPE9430 Mycoplasma penetrans 1 557 <1e-50 33.5097 833
7 561 554 - MYPE5290 Mycoplasma penetrans 79 627 1e-26 21.8914 283
1 467 466 - Mycoplasma pulmonis 1 464 <1e-50 28.3298 522
1 469 468 - Mycoplasma pulmonis 1 469 2e-27 21.7391 289
External IDs
COG 
COG0595R
EC number 
3.1.-.-
Gene ID 
876764
GI 
13508360
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR004613|Conserved hypothetical protein MG423
Old MP number 
MP221
Pathway 
RNA metabolism
PDB homologs 
1BC2-A-
PID 
g1673887
RefSeq 
NP_110310.1
Swiss-Prot protein ID 
Y621_MYCPN
phylomeDB tree 
Y621_MYCPN
UniProt 
P75174
Transcription
IMAGE BROWSERS

OPERON OP378 (Genomic Overview)
Region:742360-747710

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STRING image

STRING of Mpn621STRING legend

PDB image(s)

1BC2

PDB 1BC2
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