MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene gidA (MPN557)
Name 
gidA
Stable ID 
MPN557
Location 
677332 - 679170 +
Sequence 
    1  ATGTCTTTTA CACTAACAGT TATTGGTGGC GGTCATGCCG GATTAGAGGC CGCATTTATT
   61  GCTAGTAAAC TAGGGCTAAA AGTTAACCTC TTAGTACTAG ATCCCAACCA TGTGGGGTCG
  121  TGTCCCTGTA ACCCGGCCAT AGGAGGTCCT GCTAAAGGTA TAGTAACCCG GGAAATCGAT
  181  GTTTTAGGAG GGATGCAGGG TAAGGCCGCT GATGCCACTG CTTTACAATA CAAGCTGCTC
  241  AACAGCTCGA AAGGTCCAGC AGTGCAAGCA ATCCGCGCTC AAATAGACAA AATTGCTTAT
  301  CAGAAGTGGT TTCGCCAGCA AATTGACCAA ACGCCTAACA TTGAGTTAAT TGCTGGGGAA
  361  GCCGTTGATA TCCTTGAAAG TAACGGTAAA GTTAAAGGTG TCGTGTTAGC TGATGGTAGT
  421  GAACTGGCAT CAGATGCTGT TATTGTGACT ACGGGAACTT ATCTAAAGGC CAAAACTTAC
  481  TGTGGTAGCT TAAGCAAAGA AGAAGGTCCT GACCGCGCTA AGCGCAGTGA ATACCTTTCC
  541  ACTAACTTAA TTAAGCGGGG TTTTAAAACG TTACGACTAA AAACTGGGAC ACCACCACGG
  601  ATCCTACGCG AATCACTCGA CTTTAGCCAA ATGGCTGTGG AAGCTAACAC TACCCCTCAT
  661  TTAGCCTTTA GCTTTACTAC TAAGAATTAT TTACCACTAG AACAGCAAGT GATCTGTCAC
  721  TTAATCCATA CCAATCCCCA GATCCATCAG TTAATTCTGG CCAACTTAAA ACAGTCCGCT
  781  GTCTTTAACG GTAGTATTAA AGCAAACGGA CCACTTTACT GTCCGAGTAT TGAAGACAAG
  841  GTATTTCGCT TTCAAGACAA AGAACGGCAC CAAATCTTTG TCGAACCTGA ATCACTTAGT
  901  TTAGAAACGG TTTACCTAGC AGGGTTTTCC ACTTCCTTTC CCCCAGAGGT GCAAGAGCAC
  961  ATTGTCCGTT TACTCCCTGG GTTTAAAAAT GCCCGGTTTC AAAAGTATGG CTATGCCATT
 1021  GAATATGATG CCTTTAGTTC GATACAACTC AAATCAACAC TAGAAACTAA GTTAATTCAA
 1081  AATCTGTATT TTGCCGGACA GATTAATGGT ACCAGTGGGT ATGAGGAAGC AGCTGGCCAG
 1141  GGCTTAATCG CTGGGATTAA CGCCGCTTTA AAGCTACAGC GTAAACCCGA ATTTGTGTTA
 1201  CAGCGCAATG AGGCATACCT TGGTGTCATG ATTAACGACC TGGTTACTAA GGAAATTAGT
 1261  GATCCCTACC GCTTGTTAAC TTCGCGCGCT GAACACCGTT TGTGGTTGCG CAATGATAAC
 1321  TTACAAGAAC GTCTAATTGA AAAGAGCCGA GCCTTAGGTT TAGTGGAAGC AGATGTGTAT
 1381  GCCAATTACT TGGAACAACA ACAAAAGAAA AAACAATTAA TTGATTATTT GCAAACCACT
 1441  ACCGTTGGGC AAATTGCTGC CTTGAAATTA AACTTTAAAA ACACGGCCCA AACGCTGTTT
 1501  GACTTTACCA AGCGTGCTGA AATTAAGCTG GTTGATTTAG TACAACTACT CCCCAAGCGT
 1561  TTTGACTTGG ATGTACAAAG TTTAAACCAG ATTGACATTG ACATTAAGTA CGCTGGTTAC
 1621  ATTAAGAAGA GTGAAAAGTA CTTCAAGAGT TTAAACAACC TCAGTAGTGT CAAAATTCCC
 1681  TTAAAGTTAA ATTACCACAA AGTACCTAAC TTAGCGAGTG AAGCAATTGT TAAACTCTCC
 1741  AAAATTAGAC CAACTGATCT CAGTGTAGCT AGTCAAGTAG CGGGCATTAA CTTTAACGAT
 1801  ATTTTAGCGA TTAAACATTT TTTAGATAAC CATGAATAA
Download Sequence
Operon 
OP232
Operon location 
677338 - 681000
Protein (mpn557)
Name 
tRNA uridine 5-carboxymethylaminomethyl modification enzyme mnmG (Glucose-inhibited division protein A)
Stable ID 
Mpn557
Molecular Weight 
67320
Isoelectric Point 
9
Localization 
Cytoplasm
Comment NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34
Sequence 
MSFTLTVIGGGHAGLEAAFIASKLGLKVNLLVLDPNHVGSCPCNPAIGGPAKGIVTREIDVLGGMQGKAADATALQYKLL
NSSKGPAVQAIRAQIDKIAYQKWFRQQIDQTPNIELIAGEAVDILESNGKVKGVVLADGSELASDAVIVTTGTYLKAKTY
CGSLSKEEGPDRAKRSEYLSTNLIKRGFKTLRLKTGTPPRILRESLDFSQMAVEANTTPHLAFSFTTKNYLPLEQQVICH
LIHTNPQIHQLILANLKQSAVFNGSIKANGPLYCPSIEDKVFRFQDKERHQIFVEPESLSLETVYLAGFSTSFPPEVQEH
IVRLLPGFKNARFQKYGYAIEYDAFSSIQLKSTLETKLIQNLYFAGQINGTSGYEEAAGQGLIAGINAALKLQRKPEFVL
QRNEAYLGVMINDLVTKEISDPYRLLTSRAEHRLWLRNDNLQERLIEKSRALGLVEADVYANYLEQQQKKKQLIDYLQTT
TVGQIAALKLNFKNTAQTLFDFTKRAEIKLVDLVQLLPKRFDLDVQSLNQIDIDIKYAGYIKKSEKYFKSLNNLSSVKIP
LKLNYHKVPNLASEAIVKLSKIRPTDLSVASQVAGINFNDILAIKHFLDNHE
Post translational modifications
No post translational modifications were found
GENE/PROTEIN gidA (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-259 SSF51905 (n.a.) NULL 1.1e-37
3-612 TIGR00136 (IPR004416) Glucose-inhibited division protein A Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0002098'>'tRNA' == '' ? '': 'tRNA'; 'wobble' == '' ? '': 'wobble'; 'uridine' == '' ? '': 'uridine'; 'modification' == '' ? '': 'modification'; ('GO' == '' ? '': 'GO';:0002098)

0
4-26 PR00368 (IPR013027) FAD-dependent pyridine nucleotide-disulphide oxido 0.000036
5-198 G3DSA:3.50.50.60 (n.a.) NULL 1.2e-28
5-395 PF01134 (IPR002218) Glucose-inhibited division protein A-related Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008033'>'tRNA' == '' ? '': 'tRNA'; 'processing' == '' ? '': 'processing'; ('GO' == '' ? '': 'GO';:0008033)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0050660'>'FAD' == '' ? '': 'FAD'; 'or' == '' ? '': 'or'; 'FADH' == '' ? '': 'FADH';2 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0050660)

0
8-612 PTHR11806 (n.a.) NULL 0
134-143 PR00368 (IPR013027) FAD-dependent pyridine nucleotide-disulphide oxido 0.000036
270-284 PS01280 (IPR020595) Glucose-inhibited division protein A-related, cons 0
330-394 G3DSA:3.50.50.60 (n.a.) NULL 1.2e-28
365-388 PS01281 (IPR020595) Glucose-inhibited division protein A-related, cons 0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
306 412 106 - MAG1470 Mycoplasma agalactiae 269 375 0.0000000009 30.5556 135
3 611 608 - MAG1740 Mycoplasma agalactiae 5 605 <1e-50 45.098 1334
2 612 610 - MARTH_orf789 Mycoplasma arthritidis 4 606 <1e-50 43.6275 1313
2 604 602 - Caulobacter crescentus NA1000 4 608 <1e-50 38.715 1096
300 396 96 - Caulobacter crescentus NA1000 294 392 0.00000004 34 127
3 601 598 - MCJ_000040 Mycoplasma conjunctivae 7 596 <1e-50 45.5907 1311
2 610 608 - MHO_5290 Mycoplasma hominis 4 604 <1e-50 43.2079 1274
2 609 607 - Lactococcus lactis subsp. lactis KF147 6 623 <1e-50 43.36 1292
306 400 94 - Lactococcus lactis subsp. lactis KF147 286 380 0.000000000002 38.5417 162
3 609 606 - Bacillus subtilis subsp. subtilis 8 619 <1e-50 41.9614 1313
5 416 411 - Bacillus subtilis subsp. subtilis 1 382 0.000000000004 24.3619 164
303 416 113 - Bacillus subtilis subsp. subtilis 273 387 0.000000000007 37.6068 161
3 609 606 - Bacillus subtilis subsp. subtilis 8 619 <1e-50 41.9614 1313
3 596 593 - b3741 Escherichia coli 7 607 <1e-50 41.7219 1148
1 612 611 - MG379 Mycoplasma genitalium 1 612 <1e-50 69.9346 2312
2 608 606 - MCAP_0856 Mycoplasma capricolum subsp. capricolum 4 618 <1e-50 46.1789 1432
306 415 109 - MCAP_0613 Mycoplasma capricolum subsp. capricolum 265 374 0.00000001 29.7297 127
1 387 386 - MCAP_0476 Mycoplasma capricolum subsp. capricolum 1 357 0.0000000009 21.4976 136
2 601 599 - MS53_0515 Mycoplasma synoviae 4 594 <1e-50 47.2637 1364
1 601 600 - MHP7448_0003 Mycoplasma hyopneumoniae 7448 10 601 <1e-50 44.2786 1234
3 601 598 - MMOB1540 Mycoplasma mobile 6 595 <1e-50 45.5907 1335
2 608 606 - MSC_1017 Mycoplasma mycoides subsp. mycoides SC 4 618 <1e-50 46.0163 1430
1 387 386 - MSC_0494 Mycoplasma mycoides subsp. mycoides SC 1 357 0.00000005 21.256 121
306 425 119 - MSC_0375 Mycoplasma mycoides subsp. mycoides SC 265 385 0.000000008 29.5082 128
3 601 598 - LIC_13495 Leptospira interrogans serovar Copenhage 14 617 <1e-50 40.3909 1171
7 611 604 - MYCGA6430 Mycoplasma gallisepticum 17 621 <1e-50 53.7954 1677
3 610 607 - MYPE1670 Mycoplasma penetrans 4 611 <1e-50 49.6711 1529
2 609 607 - Mycoplasma pulmonis 5 603 <1e-50 44.8276 1366
External IDs
COG 
COG0445D
EC number 
2.1-.-
Gene ID 
877193
GI 
13508296
GO 
Cell division and chromosome partitioning/ Translation, ribosomal structure and biogenesis
Home COG 
DJ
InterPro 
IPR004416|Glucose-inhibited division protein A subfamily
InterPro 
IPR002218|Glucose-inhibited division protein A
InterPro 
IPR001100|Pyridine nucleotide-disulphide oxidoreductase, class I
InterPro 
IPR013027|FAD-dependent pyridine nucleotide-disulphide oxidoreductase
Old MP number 
MP285
Pathway 
Cell cycle
Pathway 
tRNA metabolism
PDB homologs 
1FEA-A
PDB homologs 
1ebd_A
PDB homologs 
1dxl_A
PDB homologs 
1lpf_A
Pfam 
PF01134
Pfam 
PF00070
Pfam 
PF03486
Pfam 
PF01266
Pfam 
PF07992
PID 
g1673956
RefSeq 
NP_110246.1
Swiss-Prot protein ID 
MNMG_MYCPN
phylomeDB tree No orthologous found
UniProt 
P75221
Transcription
IMAGE BROWSERS

OPERON OP232 (Genomic Overview)
Region:677338-681000

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STRING image

STRING of Mpn557STRING legend

PDB image(s)

1FEA

PDB 1FEA

1ebd

PDB 1ebd

1dxl

PDB 1dxl

1lpf

PDB 1lpf
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