MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene rpsD (MPN446)
Name 
rpsD
Stable ID 
MPN446
Location 
542664 - 543281 -
Sequence 
    1  ATGAAATACA CTGGTAGTAT TTTCAAACGA TCACGCCGCT TAGGTTTTTC GTTACTAGAA
   61  AACAACAAGG AGTTTTCGAA AGGGAAGAAG CGGAAAACGA TTCCTGGACA ACACGGGAAC
  121  CGTTTCCGTA GTTCCACTAT GTCTGGTTAT GCACAACAGT TGCAAGAAAA GCAACGGATG
  181  CAATACATGT ATGGGATTAC TGATAAACAG TTTAGACGCT TGTTTAGACT GGTATTAAAA
  241  CAACGGGGTA ACTTAGCGGT TAACCTGTTC CGTGTTTTAG AGTCACGTTT AGACAACATT
  301  GTGTACCGCA TGGGTTTTGC TCCAACCCGT CGCAGTGCGC GCCAATTAGT TAACCACGGC
  361  CACGTATTAC TCAACGATCG TACCGTGGAC ACCCCTTCCA TTATTCTCAA TCCAGGGGAT
  421  AAGGTACGCT TGAAGGCCAA AACAATTAAG ATTCCAATTG TTAAGGCGGC GAGCGAAAGC
  481  GGTGTGGTCT CCCCGTTTGT GGAAACCAAC AACAAGACCT TTGAAGGGAC ATACGTGCGC
  541  TTCCCAGAAC GTAGTGAACT CCCTGCTGGT ATTAACGAAT CGTACGTGGT CGAATGGTAC
  601  AAGCGTTTGG TTAAGTAG
Download Sequence
Operon 
OP410
Operon location 
542650 - 546393
Protein (mpn446)
Name 
30S ribosomal protein S4
Stable ID 
Mpn446
Molecular Weight 
22550
Isoelectric Point 
11
Localization 
Cytoplasm
Comment S4 was shown to act also as a transcription factor that tightly binds to RNA polymerase and is involved in antitermination of Rho-dependent termination of transcription (EMBO J. 2001, 20:3811)
Sequence 
MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQYMYGITDKQFRRLFRLVLK
QRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASES
GVVSPFVETNNKTFEGTYVRFPERSELPAGINESYVVEWYKRLVK
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation mKYTGSIFK 1 10 M
Oxidation mKYTGSIFKR 1 11 M
Oxidation FRSSTmSGYAQQLQEK 42 58 M
Oxidation SSTmSGYAQQLQEk 44 58 M
Oxidation SSTmSGYAQQLQEK 44 58 M
Oxidation SSTmSGYAQQLQEKQR 44 60 M
Oxidation MQYmYGITDK 60 70 M
Oxidation mQYMYGITDK 60 70 M
Oxidation mQYmYGITDK 60 70 M
Oxidation mGFAPTR 104 111 M
GENE/PROTEIN rpsD (Domains Overview)
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 ExportIMG
Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-94 PF00163 (IPR001912) Ribosomal protein S4/S9, N-terminal Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005622'>'intracellular' == '' ? '': 'intracellular'; ('GO' == '' ? '': 'GO';:0005622)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0019843'>'rRNA' == '' ? '': 'rRNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0019843)

6e-21
1-202 SSF55174 (n.a.) NULL 0
2-99 G3DSA:1.10.1050.10 (n.a.) NULL 5.3e-32
2-202 TIGR01017 (IPR005709) Ribosomal protein S4, bacterial-type Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0015935'>'small' == '' ? '': 'small'; 'ribosomal' == '' ? '': 'ribosomal'; 'subunit' == '' ? '': 'subunit'; ('GO' == '' ? '': 'GO';:0015935)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003735'>'structural' == '' ? '': 'structural'; 'constituent' == '' ? '': 'constituent'; 'of' == '' ? '': 'of'; 'ribosome' == '' ? '': 'ribosome'; ('GO' == '' ? '': 'GO';:0003735)

0
92-136 PTHR11831:SF4 (n.a.) NULL 0.00000018
92-136 PTHR11831 (IPR022801) Ribosomal protein S4/S9 0.00000018
93-117 PS00632 (IPR018079) Ribosomal protein S4, conserved site Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005622'>'intracellular' == '' ? '': 'intracellular'; ('GO' == '' ? '': 'GO';:0005622)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0019843'>'rRNA' == '' ? '': 'rRNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0019843)

0
95-156 PS50889 (IPR002942) RNA-binding S4 Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

0
95-159 SM00363 (IPR002942) RNA-binding S4 Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

1.3e-17
96-142 PF01479 (IPR002942) RNA-binding S4 Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

5.6e-16
100-188 G3DSA:3.10.290.10 (n.a.) NULL 4.9e-25
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
1 202 201 - MAG5610 Mycoplasma agalactiae 1 198 <1e-50 47.5248 480
2 202 200 - MARTH_orf682 Mycoplasma arthritidis 3 199 <1e-50 46.7662 470
8 200 192 - Caulobacter crescentus NA1000 9 203 4e-31 39.899 320
2 202 200 - MCJ_002520 Mycoplasma conjunctivae 3 206 <1e-50 49.7561 503
2 202 200 - MHO_0800 Mycoplasma hominis 3 199 <1e-50 48.2587 476
2 204 202 - Lactococcus lactis subsp. lactis KF147 3 203 2.99878e-43 41.9512 422
2 202 200 - Bacillus subtilis subsp. subtilis 3 200 5.00264e-43 44.5545 424
2 202 200 - Bacillus subtilis subsp. subtilis 3 200 5.00264e-43 44.5545 424
2 202 200 - Rv3458c Mycobacterium tuberculosis 3 201 8e-31 37.0732 318
2 202 200 - b3296 Escherichia coli 3 206 3e-35 39.8058 356
1 205 204 - MG311 Mycoplasma genitalium 1 205 <1e-50 87.8049 972
2 205 203 - MCAP_0237 Mycoplasma capricolum subsp. capricolum 3 207 <1e-50 51.7073 552
2 202 200 - MS53_0478 Mycoplasma synoviae 3 199 <1e-50 44.2786 445
2 202 200 - MHP7448_0576 Mycoplasma hyopneumoniae 7448 3 205 <1e-50 47.3171 462
2 202 200 - MMOB0690 Mycoplasma mobile 3 199 <1e-50 49.7512 516
2 205 203 - MSC_0278 Mycoplasma mycoides subsp. mycoides SC 3 207 <1e-50 51.7073 555
2 202 200 - LIC_12847 Leptospira interrogans serovar Copenhage 3 207 2e-28 37.5 296
2 205 203 - MYCGA5350 Mycoplasma gallisepticum 3 207 <1e-50 60.1942 663
2 204 202 - MYPE7550 Mycoplasma penetrans 3 202 <1e-50 57.1429 606
6 202 196 - Mycoplasma pulmonis 7 199 1.96182e-44 45.1777 430
External IDs
COG 
COG0522J
Gene ID 
877128
GI 
13508185
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR005709|Ribosomal protein S4, bacterial and organelle form
InterPro 
IPR001912|Ribosomal protein S4
InterPro 
IPR002942|RNA-binding S4
Old MP number 
MP395
Pathway 
Translation
PDB homologs 
1fka_D
PDB homologs 
1hnx_D
PDB homologs 
1hnw_D
Pfam 
PF01479
Pfam 
PF00163
PID 
g1674077
RefSeq 
NP_110134.1
Swiss-Prot protein ID 
RS4_MYCPN
phylomeDB tree 
RS4_MYCPN
UniProt 
P46775
Transcription
IMAGE BROWSERS

OPERON OP410 (Genomic Overview)
Region:542650-546393

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STRING image

STRING of Mpn446STRING legend

PDB image(s)

1fka

PDB 1fka

1hnx

PDB 1hnx

1hnw

PDB 1hnw
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