MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene ruvB (MPN536)
Name 
ruvB
Stable ID 
MPN536
Location 
657517 - 658440 +
Sequence 
    1  ATGAAGTTAC AAATAAAACC GCCTAACAAT TTCGCTGAGT TTGTCGGTAA ACAAGAAATT
   61  ATTAACCAAA TTCAACTCAG CATTAAAGCG TCCCGTATCA ATAAGGCGCA GTTGGACCAC
  121  ATTCTTTTAT ACGGTCCACC TGGTGTTGGT AAAACCACAT TAGCTCGCTT AATTGCGAGT
  181  GAAATGAACA CCAAACTGCA AATTATTCAG GGTGGGCACT TACAGCGACC GAGTGATTTT
  241  CTCAACGCCG TTTCCCTCAT TAAAAAGGGT GATGTACTGT TTGTGGATGA AATCCATGCA
  301  GTAGCACCCA GTGTGATGGA GTTAATGTTT CCCGTGATGG ATGATTTTCG CGTCCAAGTC
  361  TTAATTGGCA AGGACTTTAA TTCCAAGATG GTGGAAATGA AAGTTAATCC GTTTACCTGA
  421  ATCGGAGCCA CCACTCAGTT CGGTAAGATT ATCAACCCGC TGGAAGATCG CTTTGGGATG
  481  ATCCTTAACA TTGACTACTA CAGTAACCAA GAGATCGAGC GGATTGTAAG CATCTATGGT
  541  GAGCAAATGG AGTTGGAATT AAAACCGGAA GAAATTACCC AGATTACCCA ACACAGTAAG
  601  CAAACCCCGC GGATTGCCAT TCGAATTGTC AAGCGTTTGT TTGAACAGAA AATAGTCAAC
  661  AAAAAGATTG ATCTGGCTGC TCTGTTCAAA AGCTTAATGA TTTACAAAAA TGGTTTACAG
  721  AGCATTGATG TGCAATATCT CAAAGCACTC AACGGGCAGT ACGAGCCTCA GGGTATTAAG
  781  TCAATTTGTT CGATGCTAGG GATTGATAAA TCCACTGTCG AAAACAAGAT TGAGCCCTTC
  841  TTGCTGCGGG AAAACATGAT CCAAAAGACC AAGAAAGGGC GGATCATAAC CCGCACTGGG
  901  CGTAATTATT TAACTAGCTG CTAA
Download Sequence
Operon 
OP227
Operon location 
656095 - 658400
Protein (mpn536)
Name 
Holliday junction ATP-dependent DNA helicase ruvB (EC 3.6.1.-)
Stable ID 
Mpn536
Molecular Weight 
33770
Isoelectric Point 
10
Localization 
Cytoplasm
Comment -
Sequence 
MKLQIKPPNNFAEFVGKQEIINQIQLSIKASRINKAQLDHILLYGPPGVGKTTLARLIASEMNTKLQIIQGGHLQRPSDF
LNAVSLIKKGDVLFVDEIHAVAPSVMELMFPVMDDFRVQVLIGKDFNSKMVEMKVNPFTWIGATTQFGKIINPLEDRFGM
ILNIDYYSNQEIERIVSIYGEQMELELKPEEITQITQHSKQTPRIAIRIVKRLFEQKIVNKKIDLAALFKSLMIYKNGLQ
SIDVQYLKALNGQYEPQGIKSICSMLGIDKSTVENKIEPFLLRENMIQKTKKGRIITRTGRNYLTSC
Post translational modifications
No post translational modifications were found
GENE/PROTEIN ruvB (Domains Overview)
Click on the features to jump to domain info

 ExportIMG
Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
4-258 SSF52540 (n.a.) NULL 1.96182e-44
7-166 G3DSA:3.40.50.300 (n.a.) NULL 4.4e-30
9-306 TIGR00635 (IPR004605) DNA helicase, Holliday junction RuvB type Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006281'>'DNA' == '' ? '': 'DNA'; 'repair' == '' ? '': 'repair'; ('GO' == '' ? '': 'GO';:0006281) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006310'>'DNA' == '' ? '': 'DNA'; 'recombination' == '' ? '': 'recombination'; ('GO' == '' ? '': 'GO';:0006310)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0009378'>'four' == '' ? '': 'four';-'way' == '' ? '': 'way'; 'junction' == '' ? '': 'junction'; 'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0009378)

0
10-297 PTHR13779 (n.a.) NULL 0
10-297 PTHR13779:SF2 (n.a.) NULL 0
37-168 SM00382 (IPR003593) ATPase, AAA+ type, core Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0000166'>'nucleotide' == '' ? '': 'nucleotide'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0000166) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0017111'>'nucleoside' == '' ? '': 'nucleoside';-'triphosphatase' == '' ? '': 'triphosphatase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0017111)

0.00000000000019
41-165 PF00004 (IPR003959) ATPase, AAA-type, core Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524)

3.4e-17
169-224 G3DSA:1.10.8.60 (n.a.) NULL 0.0000000034
234-305 PF05491 (IPR008823) DNA helicase, Holliday junction RuvB type, C-termi Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006281'>'DNA' == '' ? '': 'DNA'; 'repair' == '' ? '': 'repair'; ('GO' == '' ? '': 'GO';:0006281) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006310'>'DNA' == '' ? '': 'DNA'; 'recombination' == '' ? '': 'recombination'; ('GO' == '' ? '': 'GO';:0006310)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0009378'>'four' == '' ? '': 'four';-'way' == '' ? '': 'way'; 'junction' == '' ? '': 'junction'; 'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0009378)

3.1e-19
236-304 PD005323 (IPR008823) DNA helicase, Holliday junction RuvB type, C-termi Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006281'>'DNA' == '' ? '': 'DNA'; 'repair' == '' ? '': 'repair'; ('GO' == '' ? '': 'GO';:0006281) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006310'>'DNA' == '' ? '': 'DNA'; 'recombination' == '' ? '': 'recombination'; ('GO' == '' ? '': 'GO';:0006310)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0009378'>'four' == '' ? '': 'four';-'way' == '' ? '': 'way'; 'junction' == '' ? '': 'junction'; 'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0009378)

0
238-304 SSF46785 (n.a.) NULL 5.8e-17
238-304 G3DSA:1.10.10.10 (IPR011991) Winged helix-turn-helix transcription repressor DN 1.1e-16
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
8 304 296 - MAG2240 Mycoplasma agalactiae 8 311 <1e-50 35.4098 547
4 203 199 - MAG7450 Mycoplasma agalactiae 191 401 0.000002 25.7919 104
1 306 305 - MARTH_orf389 Mycoplasma arthritidis 1 313 <1e-50 33.121 495
8 304 296 - Caulobacter crescentus NA1000 23 324 <1e-50 32.2368 510
8 99 91 - Caulobacter crescentus NA1000 24 118 0.000002 31.6327 108
8 307 299 - MCJ_002730 Mycoplasma conjunctivae 9 315 <1e-50 37.013 532
9 306 297 - MHO_1850 Mycoplasma hominis 8 312 <1e-50 37.5817 531
8 123 115 - Lactococcus lactis subsp. lactis KF147 11 124 0.0000007 28.4615 111
8 304 296 - Lactococcus lactis subsp. lactis KF147 22 325 <1e-50 34.2105 515
8 297 289 - Bacillus subtilis subsp. subtilis 23 319 <1e-50 35.3535 559
8 297 289 - Bacillus subtilis subsp. subtilis 23 319 <1e-50 35.3535 559
8 304 296 - b1860 Escherichia coli 25 328 <1e-50 31.9079 511
8 115 107 - b0892 Escherichia coli 22 132 0.000000004 29.9145 132
8 297 289 - LIC_12811 Leptospira interrogans serovar Copenhage 21 317 <1e-50 32.6599 497
8 304 296 - Rv2592c Mycobacterium tuberculosis 26 329 <1e-50 34.7541 543
8 213 205 - MCAP_0008 Mycoplasma capricolum subsp. capricolum 14 226 0.000009 24.8869 98
1 306 305 - MG359 Mycoplasma genitalium 1 306 <1e-50 83.3333 1306
3 304 301 - MS53_0165 Mycoplasma synoviae 1 309 <1e-50 34.9515 530
8 150 142 - MS53_0055 Mycoplasma synoviae 12 157 0.0000005 28.8462 108
8 304 296 - MHP7448_0406 Mycoplasma hyopneumoniae 7448 9 312 <1e-50 35.5263 505
5 305 300 - MMOB2710 Mycoplasma mobile 11 318 <1e-50 36.6883 531
8 304 296 - MSC_0543 Mycoplasma mycoides subsp. mycoides SC 4 304 <1e-50 35.0993 512
8 213 205 - MSC_0048 Mycoplasma mycoides subsp. mycoides SC 18 230 0.000001 24.8869 106
8 150 142 - LIC_13474 Leptospira interrogans serovar Copenhage 14 164 0.0000002 26.25 117
13 180 167 - LIC_20037 Leptospira interrogans serovar Copenhage 56 226 0.000005 26.5625 105
3 304 301 - MYCGA6030 Mycoplasma gallisepticum 1 303 <1e-50 47.2131 786
3 306 303 - MYPE2780 Mycoplasma penetrans 4 304 <1e-50 37.5817 593
8 304 296 - Mycoplasma pulmonis 9 312 <1e-50 35.4839 551
External IDs
COG 
COG2255L
EC number 
3.6.1.-
Gene ID 
877371
GI 
13508275
GO 
DNA replication, recombination and repair
Home COG 
L
InterPro 
IPR003593|AAA ATPase
InterPro 
IPR003959|AAA ATPase, central region
InterPro 
IPR004605|Holliday junction DNA helicase RuvB
InterPro 
IPR008823|Holliday junction DNA helicase RuvB, C-terminal
Old MP number 
MP306
Pathway 
transcription, DNA repair, DNA maintenance
PDB homologs 
1j7k_A
PDB homologs 
1D2N-A
PDB homologs 
1in4_A
PDB homologs 
1in5_A
Pfam 
PF01202
Pfam 
PF05729
Pfam 
PF05491
Pfam 
PF07726
Pfam 
PF01078
Pfam 
PF00931
Pfam 
PF00004
Pfam 
PF07728
Pfam 
PF07724
PID 
g1673978
RefSeq 
NP_110225.1
Swiss-Prot protein ID 
RUVB_MYCPN
phylomeDB tree 
RUVB_MYCPN
UniProt 
P75242
Transcription
IMAGE BROWSERS

OPERON OP227 (Genomic Overview)
Region:656095-658400

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STRING image

STRING of Mpn536STRING legend

PDB image(s)

1j7k

PDB 1j7k

1D2N

PDB 1D2N

1in4

PDB 1in4

1in5

PDB 1in5
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