MyMpn Project

Name	yrbC
Stable ID	MPN478
Location	582071 - 582778 -
Sequence	1 ATGCCGCGGA AGCATTTAAT TGCCAGTCAA ACAAACAAAA AACAACAATC CAACGCGAAG 61 CAACTACAAA AGTTAGCGAA GCGGATCGCT GCTGCTGTCA AAAAAGGTGG CAGTAACATT 121 GATGCCAACC CCCAGCTAAA GGTGGCAGTC GAACTAGCGT TAGCTCATGG TTTAAGTGCG 181 GATTCAATTA AACGCAACAT CCATGGCAGT GAAAAGGATC CCACAAAACT AAGCGAGTTT 241 TGCTATGAGA TCTTTGGTCC CAATGGTGTT GGCATCATTG TCTTTGGTCT AACCGATAAT 301 CCGAACCGGT TGTTGAGTAG TTTAAACGGT TACATTGCTA AATTAAAGGC ACAGCTAGCC 361 AAGCCCAACA GTGTTAAAAT TAACTTTGAG GAAAAGGGCA TTGCGCTAGT TAAACACAAT 421 AACTTTACCC AAGACGAGTT AATTGAACTG TTAATTAGTA ACAACATTAA TTTGTTAGAT 481 CTCAATGAAG ATGATGACAG CTTTGAAGTA GTGGTCGATT CACCGAGTTA CTTTGCGTTG 541 AAGGATTTAC TCGTTAAAAA CAGTTTTACG ATTGAAGCGA GTGAGTTGCG CTTAATTCCG 601 CTGTTAACGG TGGAACTTAA CGCCGAACAA CACACCCTCT TAAACCGCTT TTTAAATGCG 661 TGTGAAGAGG ATGATGACAT CCAAACAGTA GTGCATAATG CACTGTAG
Download Sequence
Operon	OP396
Operon location	579400 - 583393

MPRKHLIASQTNKKQQSNAKQLQKLAKRIAAAVKKGGSNIDANPQLKVAVELALAHGLSADSIKRNIHGSEKDPTKLSEF

CYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYIAKLKAQLAKPNSVKINFEEKGIALVKHNNFTQDELIELLISNNINLLD

LNEDDDSFEVVVDSPSYFALKDLLVKNSFTIEASELRLIPLLTVELNAEQHTLLNRFLNACEEDDDIQTVVHNAL

Name	YebC family protein; Transcription factor of the tetR family
Stable ID	Mpn478
Molecular Weight	25850
Isoelectric Point	6
Localization	Cytoplasm
Comment	Members of the YebC family have being described as TFs;It negatively regulates the quorum-sensing response; regulator pqsR of the PQS system by binding at its promoter region
Sequence	MPRKHLIASQTNKKQQSNAKQLQKLAKRIAAAVKKGGSNIDANPQLKVAVELALAHGLSADSIKRNIHGSEKDPTKLSEF CYEIFGPNGVGIIVFGLTDNPNRLLSSLNGYIAKLKAQLAKPNSVKINFEEKGIALVKHNNFTQDELIELLISNNINLLD LNEDDDSFEVVVDSPSYFALKDLLVKNSFTIEASELRLIPLLTVELNAEQHTLLNRFLNACEEDDDIQTVVHNAL

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
1-235	TIGR01033 (IPR002876)	Protein of unknown function DUF28			0
2-234	SSF75625 (IPR002876)	Protein of unknown function DUF28			0
5-234	PF01709 (IPR002876)	Protein of unknown function DUF28			0
7-70	G3DSA:1.10.10.200 (IPR017856)	Integrase, N-terminal zinc-binding domain-like			0.0000000000044
7-234	PTHR12532 (IPR002876)	Protein of unknown function DUF28			1.2e-29
78-131	G3DSA:3.30.1270.10 (n.a.)	NULL			1.3e-19
132-200	G3DSA:3.30.70.980 (n.a.)	NULL			0.000000026
209-234	G3DSA:3.30.1270.10 (n.a.)	NULL			1.3e-19

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
4	234	230	- b1864	Escherichia coli	11	236	9e-18	25.8475	206
1	233	232	- b1983	Escherichia coli	1	234	0.000000003	25.2101	133
19	235	216	- MARTH_orf271	Mycoplasma arthritidis	22	241	0.0000000000002	26.4574	163
17	233	216	- MAG6590	Mycoplasma agalactiae	20	240	0.00000000000008	25.8772	166
19	233	214	- MCJ_006060	Mycoplasma conjunctivae	22	238	0.00000000000002	27.7273	170
24	234	210	- MCAP_0598	Mycoplasma capricolum subsp. capricolum	25	235	0.00000006	26.7281	116
1	233	232	- MYCGA1330	Mycoplasma gallisepticum	1	232	<1e-50	51.2821	548
1	234	233	- MG332	Mycoplasma genitalium	1	234	<1e-50	68.8034	815
19	233	214	- MHP7448_0474	Mycoplasma hyopneumoniae 7448	22	238	0.000000000000002	29.5455	180
8	235	227	- MHO_2030	Mycoplasma hominis	8	241	0.00000000000001	27.4262	173
17	233	216	- MMOB1910	Mycoplasma mobile	20	241	0.00000000000001	26.2222	173
1	233	232	- MYPE8020	Mycoplasma penetrans	1	242	<1e-50	42.562	451
1	233	232	-	Lactococcus lactis subsp. lactis KF147	1	234	0.0000000003	25.3112	139
8	233	225	- LIC_12886	Leptospira interrogans serovar Copenhage	8	237	0.00000000000002	24.569	177
7	233	226	- MS53_0373	Mycoplasma synoviae	10	237	0.00000000000005	27.4678	168
19	233	214	- Rv2603c	Mycobacterium tuberculosis	22	237	0.000000000002	23.3945	160
7	133	126	-	Caulobacter crescentus NA1000	10	137	0.00000000000009	35.1562	171
7	233	226	-	Bacillus subtilis subsp. subtilis	21	248	8e-16	24.4541	191
7	137	130	-	Bacillus subtilis subsp. subtilis	10	142	0.000000000002	30.8271	162
1	233	232	-	Bacillus subtilis subsp. subtilis	1	234	0.00000003	24.3802	125
1	233	232	-	Bacillus subtilis subsp. subtilis	1	234	0.00000003	24.3802	125
17	233	216	-	Mycoplasma pulmonis	20	239	3e-16	28.0702	188

Gene ID	877384
GI	13508217
GO	Nucleotide transport and metabolism
Home COG	F
InterPro	IPR002876\|Protein of unknown function DUF28
Old MP number	MP363
Pathway	Metabolism of Nucleotides?
PDB homologs	1mw7_A
PDB homologs	1lfp_A
PDB homologs	1kon_A
Pfam	PF01709
PID	g1674041
RefSeq	NP_110166.1
Swiss-Prot protein ID	Y478_MYCPN
phylomeDB tree	Y478_MYCPN
UniProt	P75306