MyMpn Project

Gene ylxM (MPN424)

Name	ylxM
Stable ID	MPN424
Location	510253 - 510561 -
Sequence	1 ATGAACCAAA CCAAACTTAA CCAGCGTTTA AAGCAACAGC AACTATTTGA TATTTACGGG 61 GAACTTTTAA CCAAACGGCA AGCGTGTTAC TTTAACGAGT ACATTAACCT GGATTTGAGC 121 ATGCAAGAGA TTGCTGATAA ATACCAAGTT AAGAAAAGTT CAATCCACCA ACACATCAAA 181 ACCTGCAACC TGATCTTTAA CCGTTTTGAA GCGAAATTGC AGTTGTTTAA AAAGCAACAG 241 CTCCGTTTAA AGTTGTACGA AAAAATAACA GATCCCCAAT TACGCGAGCA ACTTATTAAA 301 CTAAGGTAA
Download Sequence
Operon	OP421
Operon location	510255 - 514575

Protein (mpn424)

Name	Putative helix-turn-helix protein, YlxM/p13-like protein; Transcription factor.
Stable ID	Mpn424
Molecular Weight	11220
Isoelectric Point	10
Localization	Cytoplasm
Comment	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein of proteins involved in SRP
Sequence	MNQTKLNQRLKQQQLFDIYGELLTKRQACYFNEYINLDLSMQEIADKYQVKKSSIHQHIKTCNLIFNRFEAKLQLFKKQQ LRLKLYEKITDPQLREQLIKLR

Post translational modifications

No post translational modifications were found

GENE/PROTEIN ylxM (Domains Overview)

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Domains (InterProScan)

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
2-92	G3DSA:1.10.10.10 (IPR011991)	Winged helix-turn-helix transcription repressor DN			5e-25
6-97	PF04297 (IPR007394)	Putative helix-turn-helix protein, YlxM/p13-like			9.7e-33
7-92	SSF88659 (IPR013324)	RNA polymerase sigma factor, region 3/4	Biological Process: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006352'>'transcription' == '' ? '': 'transcription'; 'initiation' == '' ? '': 'initiation'; ('GO' == '' ? '': 'GO';:0006352) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'of' == '' ? '': 'of';'>'regulation' == '' ? '': 'regulation'; 'of' == '' ? '': 'of'; 'transcription' == '' ? '': 'transcription'; Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003700'>'sequence' == '' ? '': 'sequence';-'specific' == '' ? '': 'specific'; 'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; 'transcription' == '' ? '': 'transcription'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003700) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016987'>'sigma' == '' ? '': 'sigma'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016987)		1.1e-18

Protein Homology (BLASTP results)

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
15	70	55	-	Bacillus subtilis subsp. subtilis	12	67	0.000003	35.7143	103
6	67	61	- MCAP_0480	Mycoplasma capricolum subsp. capricolum	8	70	0.0000000002	44.4444	132
6	67	61	- MSC_0490	Mycoplasma mycoides subsp. mycoides SC	9	71	0.0000000002	44.4444	132
14	102	88	- MYCGA1720	Mycoplasma gallisepticum	18	106	0.000003	28.0899	96
15	100	85	- MYPE4850	Mycoplasma penetrans	12	97	0.000005	32.5581	95
14	60	46	-	Mycoplasma pulmonis	19	65	0.0000006	44.6809	102

External IDs

COG	COG2739S
Gene ID	876863
GI	13508163
GO	Transcription
Home COG	K
InterPro	IPR007394\|Putative helix-turn-helix protein, YlxM/p13-like
InterPro	IPR013324\|Sigma factor, regions 3 and 4
Old MP number	MP417
Pathway	Regulation, transcription, TF
PDB homologs	1s7o
PDB homologs	1XSV
Pfam	PF04297
PID	g1674101
RefSeq	NP_110112.1
Swiss-Prot protein ID	Y424_MYCPN
phylomeDB tree	No orthologous found
UniProt	P75363

Transcription

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OPERON OP421 (Genomic Overview)

Region:510255-514575

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STRING image

STRING legend

PDB image(s)

PDB 1s7o

PDB 1XSV