MyMpn Project

Name	rnjA
Stable ID	MPN280
Location	331360 - 333069 +
Sequence	1 ATGATTAAGG ATTTTGATCC TAGTGAGTTT GTCGGTAAAA CTCCTACCAA GATTTTTGCC 61 TTTGGTGGTA TCCAAGAAGT TGGAAAAAAC ATGTATGGAA TCGAGTACGA TGATGAGATT 121 ATCATCATCG ACTGCGGTAT TAAGTTTGCT AGTGATGATC TACTAGGGAT TGATGGTATT 181 ATCCCGAGCT TCGAATACCT CATTGAAAAC CAAGCTAAGG TTAAAGCACT GTTTATCACC 241 CACGGCCATG AAGACCACAT TGGTGGGGTG CCTTACTTGT TAAAACAAGT CGATGTACCG 301 GTGATTTACG CACCCCGGAT TGCCGCTTCT TTGATCTTAA AGAAGGTCAA CGAACACAAG 361 GATGCTAAGC TCAATAAAGT GGTCGTATAT GATGACTTTA GCAACTTTGA AACCAAGCAC 421 TTCAAGATTG ACTTTTACCG CGTCAACCAC TCGATTCCTG ACGCCTTTGG TGTCTGTGTT 481 CAAACTCCCA ACGGTAACAT TGTTGAGAGT GGTGACTTTC GCTTTGACTT TGCCGCTGGC 541 GGGGAAATGC TCGATGTGCA TAAGGTCGTG AAGATTGCCG AGCGCAATGT CCATGTCTTT 601 ATGTGTGAGA CTACTAACGC CGAAATCCCG GGGTTCTCCC AGAGCGAAAA GTTAATTTAC 661 CGCAACATCA ACAAGATTAT TAAAGAAGCA CGTGGTCGGG TCATTCTCAC TACCTTTGCT 721 TCCAACATTA CCCGGATTAA CGAAATTATT GAGATTGCTG TTAACAATAA ACGGAAGGTC 781 TGCTTGTTGG GTAAGTCGAT GGATGTGAAC GTCAACATCT CGCGTAAGAT TGGCTTAATG 841 GACATTGACA GCAATGACAT TGTGGAAGTC CGTGACATTA AGAATTACCC CGACCGCAGT 901 ATCTTAATCT TGTGTACGGG TTCCCAAGGT GAAGACTCAG CAGCCTTAAA CACAATGGCA 961 CGGGGTAAAC ATAACTGGGT TAGCTTAAAG TCCACTGACA CCATTATTAT GTCCTCCAAC 1021 CCGATTCCGG GGAACTATGC AGCGGTGGAA AATCTCTTGA ATGAGCTTTC GAAGTACGGG 1081 GTGACCATCT TTGAAAACTC ACCGAACATG AAGCTACACG CCTCTGGTCA CGCTACCCAG 1141 CAAGAGTTGC AGTTAATGTT AAACCTCGTG TTTCCAAGGT ACTTAATTCC GATTCACGGG 1201 GAGTACAAGA TGATGCGCAC CATCAAAAAC ATAGCGCAAG AATGTGGCAT TAACGGTGAT 1261 GATGTTGGTT TGCTAGCTAA CGGTCAGGTG ATGTACCTAA TTGATGGCAA GCTGTATTAC 1321 TCAGGGGAAG TGATTAATGC TGACCCGATT TACATTGAAA GCCGCAATTC TTCTCCAGAC 1381 TTAGCGCGGG TAATTAAACA ACGCCAAATC TTGAGTCGGG AGGGAATGTT TGCTGTGATT 1441 GTAGTCTTTG ACAAAAACAA TAACATTTTA GGGATGCCTA CTCTGATTAC TCGGGGTTGT 1501 TTCTTTGCTC TAGATTCCAG TCCGTTAATG ACTAAGATTA CCCACTCAAT TAAACGCGGT 1561 TTGGAAAACG TTATTCAAAA CAAGCGTTTT AATACCCGTG AACAGATGAT CAAGGAATTG 1621 AAACGAGTAT GTAAGGAAAC GGTGTCTTAC TTCATTTGGA AGAACAAGAG TCGTAACCCG 1681 TTGATTTCAA CCGTATTGTC TTGAGTTTAA
Download Sequence
Operon	OP111
Operon location	331360 - 333069

MIKDFDPSEFVGKTPTKIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGIIPSFEYLIENQAKVKALFIT

HGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHKDAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCV

QTPNGNIVESGDFRFDFAAGGEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFA

SNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTMA

RGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIHG

EYKMMRTIKNIAQECGINGDDVGLLANGQVMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVI

VVFDKNNNILGMPTLITRGCFFALDSSPLMTKITHSIKRGLENVIQNKRFNTREQMIKELKRVCKETVSYFIWKNKSRNP

LISTVLSWV

Name	Ribonuclease J1 (RNase J1) (EC 3.1.-.-)
Stable ID	Mpn280
Molecular Weight	62590
Isoelectric Point	8
Localization	Cytoplasm
Comment	-
Sequence	MIKDFDPSEFVGKTPTKIFAFGGIQEVGKNMYGIEYDDEIIIIDCGIKFASDDLLGIDGIIPSFEYLIENQAKVKALFIT HGHEDHIGGVPYLLKQVDVPVIYAPRIAASLILKKVNEHKDAKLNKVVVYDDFSNFETKHFKIDFYRVNHSIPDAFGVCV QTPNGNIVESGDFRFDFAAGGEMLDVHKVVKIAERNVHVFMCETTNAEIPGFSQSEKLIYRNINKIIKEARGRVILTTFA SNITRINEIIEIAVNNKRKVCLLGKSMDVNVNISRKIGLMDIDSNDIVEVRDIKNYPDRSILILCTGSQGEDSAALNTMA RGKHNWVSLKSTDTIIMSSNPIPGNYAAVENLLNELSKYGVTIFENSPNMKLHASGHATQQELQLMLNLVFPRYLIPIHG EYKMMRTIKNIAQECGINGDDVGLLANGQVMYLIDGKLYYSGEVINADPIYIESRNSSPDLARVIKQRQILSREGMFAVI VVFDKNNNILGMPTLITRGCFFALDSSPLMTKITHSIKRGLENVIQNKRFNTREQMIKELKRVCKETVSYFIWKNKSRNP LISTVLSWV

Modification	Modified sequence	Relative start	Relative end	Amino acid
Oxidation	mIKDFDPSEFVGK	1	14	M
Oxidation	mIKDFDPSEFVGKTPTK	1	18	M
Oxidation	FDFAAGGEmLDVHK	175	189	M
Oxidation	FDFAAGGEmLDVHKVVK	175	192	M
Oxidation	NVHVFmcETTNAEIPGFSQSEK	196	218	M
Oxidation	SmDVNVNISR	266	276	M
Oxidation	SmDVNVNISr	266	276	M
Oxidation	SmDVNVNISRK	266	277	M
Oxidation	KIGLmDIDSNDIVEVR	276	292	M
Oxidation	IGLmDIDSNDIVEVR	277	292	M
Oxidation	STDTIImSSNPIPGNYAAVENLLNELSK	331	359	M
Oxidation	YGVTIFENSPNmk	359	372	M
Oxidation	YGVTIFENSPNmK	359	372	M
Oxidation	LHASGHATQQELQLmLNLVFPR	372	394	M
Oxidation	EGmFAVIVVFDKNNNILGmPTLITR	474	499	M
Oxidation	GcFFALDSSPLmTk	499	513	M
Oxidation	GcFFALDSSPLmTK	499	513	M
Methylation	gLENVIQNkR	520	530	K

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
14-253	G3DSA:3.60.15.10 (n.a.)	NULL			1.30321e-43
16-433	SSF56281 (n.a.)	NULL			9.80909e-45
26-185	PF00753 (IPR001279)	Beta-lactamase-like	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787)		7.9e-25
28-223	SM00849 (IPR001279)	Beta-lactamase-like	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787)		2.4e-18
60-105	PTHR12553:SF4 (n.a.)	NULL			0.000044
60-105	PTHR12553 (n.a.)	NULL			0.000044
371-403	PF07521 (IPR011108)	RNA-metabolising metallo-beta-lactamase			0.00000033
373-401	PS01292 (IPR001587)	Ribonuclease J, conserved site	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'hydrolase' == '' ? '': 'hydrolase';'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0046872'>'metal' == '' ? '': 'metal'; 'ion' == '' ? '': 'ion'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0046872)		0

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
18	567	549	- MAG6810	Mycoplasma agalactiae	6	554	5e-33	22.807	335
14	562	548	- MAG7120	Mycoplasma agalactiae	2	550	<1e-50	38.061	960
15	562	547	- MARTH_orf128	Mycoplasma arthritidis	3	546	<1e-50	38.2514	989
19	566	547	- MARTH_orf674	Mycoplasma arthritidis	7	549	2e-21	20.7447	235
49	566	517	-	Caulobacter crescentus NA1000	46	556	<1e-50	27.9026	547
19	526	507	- MCJ_002550	Mycoplasma conjunctivae	7	534	2e-29	22.7357	304
15	569	554	- MCJ_006640	Mycoplasma conjunctivae	7	557	<1e-50	35.6506	962
14	562	548	- MHO_3380	Mycoplasma hominis	2	547	<1e-50	36.5455	962
19	566	547	- MHO_3690	Mycoplasma hominis	7	548	1e-21	21.164	236
17	566	549	-	Lactococcus lactis subsp. lactis KF147	5	549	<1e-50	29.6029	666
18	562	544	-	Lactococcus lactis subsp. lactis KF147	14	551	<1e-50	36.3964	968
17	569	552	-	Bacillus subtilis subsp. subtilis	10	555	<1e-50	31.8919	825
9	569	560	-	Bacillus subtilis subsp. subtilis	5	558	<1e-50	37.3451	1025
17	569	552	-	Bacillus subtilis subsp. subtilis	10	555	<1e-50	31.8919	824
9	569	560	-	Bacillus subtilis subsp. subtilis	2	555	<1e-50	37.3451	1024
4	562	558	- Rv2752c	Mycobacterium tuberculosis	4	551	<1e-50	29.9645	732
1	569	568	- MG139	Mycoplasma genitalium	1	569	<1e-50	85.413	2652
17	567	550	- MG423	Mycoplasma genitalium	5	560	1e-33	23.6749	339
3	566	563	- MCAP_0623	Mycoplasma capricolum subsp. capricolum	38	606	<1e-50	39.1304	1163
17	567	550	- MCAP_0255	Mycoplasma capricolum subsp. capricolum	5	553	6.00036e-42	23.8011	413
18	569	551	- MS53_0647	Mycoplasma synoviae	6	555	3e-28	21.6549	294
15	569	554	- MS53_0542	Mycoplasma synoviae	3	555	<1e-50	36.0714	924
15	560	545	- MHP7448_0092	Mycoplasma hyopneumoniae 7448	7	525	<1e-50	36.0656	923
19	566	547	- MHP7448_0009	Mycoplasma hyopneumoniae 7448	7	555	8e-35	23.0228	351
17	501	484	- MMOB6210	Mycoplasma mobile	5	491	6e-25	20.9581	266
15	569	554	- MMOB6180	Mycoplasma mobile	3	554	<1e-50	37.2302	989
3	566	563	- MSC_0670	Mycoplasma mycoides subsp. mycoides SC	37	605	<1e-50	39.4783	1158
17	567	550	- MSC_0300	Mycoplasma mycoides subsp. mycoides SC	5	553	8.00001e-42	23.9787	412
19	483	464	- MYCGA0830	Mycoplasma gallisepticum	24	495	4e-16	21.0417	190
1	562	561	- MYCGA0200	Mycoplasma gallisepticum	1	559	<1e-50	58.6268	1757
54	562	508	- MYPE9430	Mycoplasma penetrans	42	553	7e-23	20	250
16	566	550	- MYPE5290	Mycoplasma penetrans	76	624	<1e-50	45.5696	1356
17	566	549	-	Mycoplasma pulmonis	5	543	1e-27	20.6714	289
16	566	550	-	Mycoplasma pulmonis	4	551	<1e-50	35.3153	884

COG	COG0595R
EC number	3.1.-.-
Gene ID	877383
GI	13508019
GO	Translation, ribosomal structure and biogenesis
Home COG	J
InterPro	IPR011108\|RNA-metabolising metallo-beta-lactamase
InterPro	IPR002048\|Calcium-binding EF-hand
InterPro	IPR001587\|Protein of unknown function UPF0036
InterPro	IPR001279\|Beta-lactamase-like
Old MP number	MP555
Pathway	Metabolism RNA
PDB homologs	1BC2-A
Pfam	PF00753
Pfam	PF07521
PID	g1674253
RefSeq	NP_109968.1
Swiss-Prot protein ID	RNJ_MYCPN
phylomeDB tree	No orthologous found
UniProt	P75497