MyMpn Project

Name	ymdA
Stable ID	MPN269
Location	319703 - 321184 +
Sequence	1 ATGAGCGCTA AGTTAACGTT AGAAAGCATT GCAAAAACAT TTGCCGAAAC ATCGATCTTT 61 GCGATCTTGT TTTTAATTAT TGTCATCCTC AATTTAGGTT TACTTGTTTT TTTAGCGTAT 121 CAGTACCGTG TTTACAAAAA GAAGCAAAGA GCAAACCTCA CCAAGCAGAC TTATAACAAT 181 GACTATGGCC AAATTGTTAA TTTAAAACAG CAAAACGGTG CCAAGATAAA GGAGCTTGCT 241 AACTTAAAAG ATCAGTTAAG TGAATTAGGC CAAAAATTTA ACACCACACT GAGTGAAATC 301 ATTAACAAAC CACTTGTCAA TGTGATTGAT GAATACTTGG ATGAACAGTT TAAACAAGCT 361 GCTAATTTTC GTGAAGCAGA ACTTAATGCC GTTTTAGATA GTAATGACCA GAAAACAGTG 421 TTCCATAAGC GTTTGTTCAA TAAATTTCAC TTTGGTGTCG ACAAGCTAGC TAATATTAAT 481 GTCAAAAATC CGCTCAATTT ATGCTGGGTT GACAGCGCTA GTTTTACCGT GATTGAAAGT 541 GATTTCCGCA AACTTAATGG TGTTGGCGGG ATTAATAAAA AGTTGTTAAT TGAAAAGTTA 601 AGGATTGAAG ATATTATCTT TACCAATATC GATAAGAAGT ACTATGAGGT ACAGATACTA 661 TCTGACTCGC CAGTAAAGGT ACAAAAAACA GTGTTAACTA TTCGCAACAT CTTGATTAAT 721 GATTACGTGG ACAATGAAAA AATTGAGTCA TATGCTAGGG AAGCTAACGG TTACTTCAAT 781 GACCACTGTA AACTGATTGG TAAGCAGGTG TTAGAACGAC TCAATATCTT TGAAATTAGC 841 CCTAAACTAC ACAAGTTTTT TGGTTTATTA GCGTTTCGTT ATTCTTTCGG TCAAAACGTT 901 TTATCACACT GTCTGGAAAC TGGTTTTCTC ACCGCTTACC TAGCGCTTTT AGTTAACTTT 961 AAACCTGATG TTGCATTAAA GTGCGGTTTG TATCATGATA TTGGTAAAGC GGATGATGAA 1021 AACGGGAAGA AGAACCACAC GGTTACAGGT GCCAAGATCG GTGATGAATT TTACTTTGAA 1081 AACGATGTCA AATACACAAT TGCCAACCAC CATAATAAAA ATGTCGATAA CGTATACTGT 1141 CGTTTAACTC AAATTGGCGA TAAGCTTTCA GCAGGGCGTT TGGGTGCGCG CTCTGACAGT 1201 TCGGTTTTAT TTAGCCAACT CAAACAAGAA TTAAAGCAAA TTGTGGAAGA AACACTAGCA 1261 CAATTTAAAA CAACCATCCT TTTAGGACAA AGTGGACGCC GATTAGTAAT TTGATTGGAA 1321 ACCAACCAGC ACAATAACAT TATTGACAAC CAACAGTTAA CTGATTTGGC TACTACCATT 1381 AAAAGCAAAA TCGTGCAAAA CAACATTACT AATCGCTTTC CAATTAAGGT AGTATTACGC 1441 TATAACTTCG AACACAGCTT TGATACAAAG GACAAGAACT AG
Download Sequence
Operon	OP105
Operon location	318150 - 321500

MSAKLTLESIAKTFAETSIFAILFLIIVILNLGLLVFLAYQYRVYKKKQRANLTKQTYNNDYGQIVNLKQQNGAKIKELA

NLKDQLSELGQKFNTTLSEIINKPLVNVIDEYLDEQFKQAANFREAELNAVLDSNDQKTVFHKRLFNKFHFGVDKLANIN

VKNPLNLCWVDSASFTVIESDFRKLNGVGGINKKLLIEKLRIEDIIFTNIDKKYYEVQILSDSPVKVQKTVLTIRNILIN

DYVDNEKIESYAREANGYFNDHCKLIGKQVLERLNIFEISPKLHKFFGLLAFRYSFGQNVLSHCLETGFLTAYLALLVNF

KPDVALKCGLYHDIGKADDENGKKNHTVTGAKIGDEFYFENDVKYTIANHHNKNVDNVYCRLTQIGDKLSAGRLGARSDS

SVLFSQLKQELKQIVEETLAQFKTTILLGQSGRRLVIWLETNQHNNIIDNQQLTDLATTIKSKIVQNNITNRFPIKVVLR

YNFEHSFDTKDKN

Name	Endoribonuclease Y (Rnase Y)
Stable ID	Mpn269
Molecular Weight	54230
Isoelectric Point	9
Localization	SIGNALP
Comment	B. subtilis YmdA ortholog, involved in riboswitch processing and mRNA decay (EMBO J, 2009, 1–11)
Sequence	MSAKLTLESIAKTFAETSIFAILFLIIVILNLGLLVFLAYQYRVYKKKQRANLTKQTYNNDYGQIVNLKQQNGAKIKELA NLKDQLSELGQKFNTTLSEIINKPLVNVIDEYLDEQFKQAANFREAELNAVLDSNDQKTVFHKRLFNKFHFGVDKLANIN VKNPLNLCWVDSASFTVIESDFRKLNGVGGINKKLLIEKLRIEDIIFTNIDKKYYEVQILSDSPVKVQKTVLTIRNILIN DYVDNEKIESYAREANGYFNDHCKLIGKQVLERLNIFEISPKLHKFFGLLAFRYSFGQNVLSHCLETGFLTAYLALLVNF KPDVALKCGLYHDIGKADDENGKKNHTVTGAKIGDEFYFENDVKYTIANHHNKNVDNVYCRLTQIGDKLSAGRLGARSDS SVLFSQLKQELKQIVEETLAQFKTTILLGQSGRRLVIWLETNQHNNIIDNQQLTDLATTIKSKIVQNNITNRFPIKVVLR YNFEHSFDTKDKN

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
270-427	SSF109604 (n.a.)	NULL			0.00000000012
282-419	G3DSA:1.10.3210.10 (n.a.)	NULL			5.7e-16
296-373	TIGR00277 (IPR006675)	Uncharacterised protein family HDIG			6.19999e-19
296-401	SM00471 (IPR003607)	Metal-dependent phosphohydrolase, HD domain	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003824'>'catalytic' == '' ? '': 'catalytic'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003824)		0.00000000032
300-391	PF01966 (IPR006674)	Metal-dependent phosphohydrolase, HD subdomain			0.00000003

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
224	371	147	-	Lactococcus lactis subsp. lactis KF147	271	418	0.0000000000001	27.027	172
216	464	248	-	Bacillus subtilis subsp. subtilis	247	495	5e-18	26.2948	213
216	464	248	-	Bacillus subtilis subsp. subtilis	251	499	6e-18	26.2948	213
40	490	450	- MG130	Mycoplasma genitalium	39	483	<1e-50	59.0708	1401
210	465	255	- MCAP_0550	Mycoplasma capricolum subsp. capricolum	235	489	5e-22	28.4047	240
210	437	227	- MSC_0422	Mycoplasma mycoides subsp. mycoides SC	235	463	2e-21	29.8701	236
259	397	138	- MYCGA4710	Mycoplasma gallisepticum	312	472	2e-16	32.2981	193
184	489	305	- MYPE5440	Mycoplasma penetrans	163	460	9e-34	31.1688	343

COG	COG1418R
EC number	3.1.-.-
EC number	3.1.26.-
Gene ID	876964
GI	13508008
GO	General function prediction only
Home COG	R
InterPro	IPR006674\|Metal-dependent phosphohydrolase, HD region, subdomain
InterPro	IPR006675\|HDIG
InterPro	IPR004088\|KH, type 1
InterPro	IPR003607\|Metal-dependent phosphohydrolase, HD region
Old MP number	MP564
Pathway	Regulation
Pathway	Metabolism nucleotide
PDB homologs	1i84_V
Pfam	PF01966
PID	g1674264
RefSeq	NP_109957.1
Swiss-Prot protein ID	CNPD_MYCPN
phylomeDB tree	No orthologous found
UniProt	P75506