MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene smpB (MPN074)
Name 
smpB
Stable ID 
MPN074
Location 
87898 - 88341 -
Sequence 
    1  ATGCGAGTAC TTGTCAACAA TCCCAGAGCG CAATATGACT ATTACCTTTT AACGGGTTAT
   61  TGTGCTGGCT TAGTCTTAAA AGGTAGTGAA GTCAAATCGC TAGCTTTAGG GCAAGGTAGC
  121  TTAAAGGAAG CCTATGTTTT TATTGACAAG CACGAGGTCT ATATTAAAGA TTTTAGCATT
  181  TCGCCCTATG CCTTTTCAGG CGAGTTCAAC CACCCCTTCA AACGGGTGAA AAAGCTCCTT
  241  TTAAACCGGA ATGAGATTAA ACAAATTACG GCACGCCAAA AGCAAGAAGG ACTTTCCATT
  301  ATTCCACTTA AAGTGTTCTT TAAAAATGGC AAAATTAAAA TGGAAATCTG GTTGGCCAAA
  361  CCTAAGAAAA AATTTGATAA ACGTGAAGCC ATCAAAAGTA AAACGATCCA GCGCGAATTG
  421  CGCCAACAAT ATGGATCGCC ATAA
Download Sequence
Operon 
OP563
Operon location 
86485 - 88480
Protein (mpn074)
Name 
tmRNA-binding protein
Stable ID 
Mpn074
Molecular Weight 
16170
Isoelectric Point 
11
Localization 
Cytoplasm
Comment Binds tmRNA. Involved in translacion quality (trans-translation) if a problematic mRNA is staying on a ribosome, is replaced by the internal coding region of tmRNA including a stop codon, and the normal terminal process occurs so that the stalled ribosome can be rescued
Sequence 
MRVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSISPYAFSGEFNHPFKRVKKLL
LNRNEIKQITARQKQEGLSIIPLKVFFKNGKIKMEIWLAKPKKKFDKREAIKSKTIQRELRQQYGSP
Post translational modifications
No post translational modifications were found
GENE/PROTEIN smpB (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-127 SSF74982 (IPR000037) SsrA-binding protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

4.49999e-41
3-66 PF01668 (IPR000037) SsrA-binding protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

1.3e-17
3-122 G3DSA:2.40.280.10 (IPR000037) SsrA-binding protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

1.7e-37
3-145 TIGR00086 (IPR000037) SsrA-binding protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

0
7-127 PD004488 (IPR000037) SsrA-binding protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)

0
22-34 PS01317 (IPR020081) SsrA-binding protein, conserved site 0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
7 137 130 - b2620 Escherichia coli 17 148 6e-19 35.6061 213
1 132 131 - MARTH_orf151 Mycoplasma arthritidis 1 130 0.00000000000005 34.5865 165
1 134 133 - MAG7390 Mycoplasma agalactiae 1 133 0.00000000003 32.6087 141
1 144 143 - MCJ_005720 Mycoplasma conjunctivae 1 141 2e-24 36.8056 255
3 141 138 - MCAP_0096 Mycoplasma capricolum subsp. capricolum 5 145 2e-25 42.5532 264
1 142 141 - MYCGA4430 Mycoplasma gallisepticum 2 143 3e-32 46.4789 322
1 144 143 - MG059 Mycoplasma genitalium 1 144 <1e-50 65.9722 531
1 140 139 - MHP7448_0269 Mycoplasma hyopneumoniae 7448 1 137 1e-21 40.4255 231
2 144 142 - MHO_1910 Mycoplasma hominis 3 143 0.000000000000001 29.1667 178
1 142 141 - MMOB2640 Mycoplasma mobile 1 139 7e-23 39.1608 241
3 144 141 - MSC_0857 Mycoplasma mycoides subsp. mycoides SC 5 147 4e-25 40.5594 261
1 143 142 - MYPE3530 Mycoplasma penetrans 1 143 2e-27 39.8601 283
4 143 139 - Lactococcus lactis subsp. lactis KF147 10 149 1e-22 37.1429 243
7 140 133 - LIC_12418 Leptospira interrogans serovar Copenhage 15 149 6e-26 42.2222 273
1 126 125 - MS53_0480 Mycoplasma synoviae 1 123 0.0000000000006 35.4331 156
3 145 142 - Rv3100c Mycobacterium tuberculosis 11 153 1e-24 33.5664 261
4 139 135 - Caulobacter crescentus NA1000 5 141 6e-24 35.0365 256
2 144 142 - Bacillus subtilis subsp. subtilis 7 149 2e-27 37.7622 288
2 144 142 - Bacillus subtilis subsp. subtilis 7 149 2e-27 37.7622 288
2 142 140 - Mycoplasma pulmonis 3 141 0.00000000000001 31.4685 172
External IDs
COG 
COG0691O
Gene ID 
876876
GI 
13507813
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR000037|SmpB protein
Old MP number 
MP081
Pathway 
Translation
PDB homologs 
1j1h_A
PDB homologs 
1p6v_A
PDB homologs 
1k8h_A
Pfam 
PF01668
PID 
g1673735
RefSeq 
NP_109762.1
Swiss-Prot protein ID 
SSRP_MYCPN
phylomeDB tree 
SSRP_MYCPN
UniProt 
P75043
Transcription
IMAGE BROWSERS

OPERON OP563 (Genomic Overview)
Region:86485-88480

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STRING image

STRING of Mpn074STRING legend

PDB image(s)

1j1h

PDB 1j1h

1p6v

PDB 1p6v

1k8h

PDB 1k8h
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