MyMpn Project

1 ATGTGCCCCA GTTCATTCGT ACTGGTGATA AGATTGTGAT TTCCACCATT GACGGGAGCT 61 ATCGTGAACG GTACAACAAG TAAATTAACT AGAACCCAAA GACGGATTGC AATTGTGGAG 121 TTTATCTTCG CCACGCTGTT CTTTTTACCG AAAACTGCTG ACCAAATCCA AGCGGCCTTT 181 TTGGACTATG ATGTGCCAGA ACGTCCGCTC AACGATTGGC AAAAAGAGAT TGTCAAAGTC 241 TTTAGTGAAC GTTGTGTGGA ATTCATTGAA CTAATTGAAA ACCAACAACA ACGCAACCAA 301 GCAGAAGTAC AAAGCAAGTA CAACAAGGTT TCCGGTAAAA AAGTCGACTT ATTGACTAAG 361 GCCGTGATTC TCTGTGCTTT GAGCGAACAA CACGCGCAAG CGACTGATAA ACCATTATTA 421 ATTAGTGAAG CCTTACTGAT TATGGACCAC TATTCCCAGG TACCCGAAAA GAAGCAAACC 481 CATGCTTTAT TGGATAAACT CTTGTAA

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
18-168	G3DSA:1.10.940.10 (IPR006027)	NusB/RsmB/TIM44	Biological Process: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'of' == '' ? '': 'of';'>'regulation' == '' ? '': 'regulation'; 'of' == '' ? '': 'of'; 'transcription' == '' ? '': 'transcription'; Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)		0
29-168	PF09185 (IPR015268)	Protein of unknown function DUF1948			0
29-168	SSF48013 (IPR006027)	NusB/RsmB/TIM44	Biological Process: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'of' == '' ? '': 'of';'>'regulation' == '' ? '': 'regulation'; 'of' == '' ? '': 'of'; 'transcription' == '' ? '': 'transcription'; Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723)		1.90001e-33

Name	nusB
Stable ID	MPN030
Location	34469 - 34975 +
Sequence	1 ATGTGCCCCA GTTCATTCGT ACTGGTGATA AGATTGTGAT TTCCACCATT GACGGGAGCT 61 ATCGTGAACG GTACAACAAG TAAATTAACT AGAACCCAAA GACGGATTGC AATTGTGGAG 121 TTTATCTTCG CCACGCTGTT CTTTTTACCG AAAACTGCTG ACCAAATCCA AGCGGCCTTT 181 TTGGACTATG ATGTGCCAGA ACGTCCGCTC AACGATTGGC AAAAAGAGAT TGTCAAAGTC 241 TTTAGTGAAC GTTGTGTGGA ATTCATTGAA CTAATTGAAA ACCAACAACA ACGCAACCAA 301 GCAGAAGTAC AAAGCAAGTA CAACAAGGTT TCCGGTAAAA AAGTCGACTT ATTGACTAAG 361 GCCGTGATTC TCTGTGCTTT GAGCGAACAA CACGCGCAAG CGACTGATAA ACCATTATTA 421 ATTAGTGAAG CCTTACTGAT TATGGACCAC TATTCCCAGG TACCCGAAAA GAAGCAAACC 481 CATGCTTTAT TGGATAAACT CTTGTAA
Download Sequence
Operon	OP10
Operon location	33046 - 36000

Name	Transcription termination/antitermination protein NusB
Stable ID	Mpn030
Molecular Weight	18480
Isoelectric Point	8
Localization	SIGNALP
Comment	-
Sequence	MCPSSFVLVIRLWFPPLTGAIVNGTTSKLTRTQRRIAIVEFIFATLFFLPKTADQIQAAFLDYDVPERPLNDWQKEIVKV FSERCVEFIELIENQQQRNQAEVQSKYNKVSGKKVDLLTKAVILCALSEQHAQATDKPLLISEALLIMDHYSQVPEKKQT HALLDKLL

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
22	168	146	- MG027	Mycoplasma genitalium	5	151	<1e-50	73.4694	557

Gene ID	876895
GI	13507769
GO	Translation, ribosomal structure and biogenesis/Transcription
Home COG	JK
InterPro	IPR006027\|NusB/RsmB/TIM44
Old MP number	MP124
Pathway	Ribosome?
Pathway	Transcription
Pfam	PF09185
PID	g1673783
RefSeq	NP_109718.1
Swiss-Prot protein ID	Y030_MYCPN
phylomeDB tree	No orthologous found
UniProt	P75084