MyMpn Project

1 ATGACTATGC AAGTAGAATA CCTCGATCTC ATCTCCCAAG CGAAGGAGAT TGCTGAGACC 61 CAATTTAAGG CGGAACCGTT TTCCTTTGAT GCTATTTGAA AGGAAGTAGT GAAGCACTTT 121 AAGATCTCCA AACAAGACGA ACCTAACCTA ATTTCGCGGT TTTACCAAGA CTTTTTGGAA 181 GACCCTAACT TTGTTTATTT AGGGGAACGC AACTGGAAGT TAAGGGACTT CATGAAGTTT 241 GATGAATGGA ACAAGATTTC CCAAGCAATG TTTGTGACCA AGGAAATCTT TGAAGAGGGT 301 TATGAAGACC TGTCCAACAA GAAGAAGGAA AACGAGGAAG AAGTGAATGA CTTCATTATG 361 GGCAATGATG GTGATGACAA CAGTACCGGT GATGAAATTG TGCAAGGACT CATTAACGAT 421 TTTCGCGACG ATAACCAATA A

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
3-146	MF_00357 (IPR007759)	DNA-directed RNA polymerase delta subunit	Biological Process: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006350'>'transcription' == '' ? '': 'transcription'; ('GO' == '' ? '': 'GO';:0006350) Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677)		11.198
4-89	PF05066 (IPR007759)	DNA-directed RNA polymerase delta subunit	Biological Process: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006350'>'transcription' == '' ? '': 'transcription'; ('GO' == '' ? '': 'GO';:0006350) Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003677'>'DNA' == '' ? '': 'DNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003677)		3.3e-23
94-115	coil (n.a.)	NULL	n.a.		0
106-116	seg (n.a.)	NULL	n.a.		0

Name	rpoE
Stable ID	MPN024
Location	29804 - 30244 +
Sequence	1 ATGACTATGC AAGTAGAATA CCTCGATCTC ATCTCCCAAG CGAAGGAGAT TGCTGAGACC 61 CAATTTAAGG CGGAACCGTT TTCCTTTGAT GCTATTTGAA AGGAAGTAGT GAAGCACTTT 121 AAGATCTCCA AACAAGACGA ACCTAACCTA ATTTCGCGGT TTTACCAAGA CTTTTTGGAA 181 GACCCTAACT TTGTTTATTT AGGGGAACGC AACTGGAAGT TAAGGGACTT CATGAAGTTT 241 GATGAATGGA ACAAGATTTC CCAAGCAATG TTTGTGACCA AGGAAATCTT TGAAGAGGGT 301 TATGAAGACC TGTCCAACAA GAAGAAGGAA AACGAGGAAG AAGTGAATGA CTTCATTATG 361 GGCAATGATG GTGATGACAA CAGTACCGGT GATGAAATTG TGCAAGGACT CATTAACGAT 421 TTTCGCGACG ATAACCAATA A
Download Sequence
Operon	OP9
Operon location	29803 - 32900

Name	DNA-directed RNA polymerase delta subunit
Stable ID	Mpn024
Molecular Weight	16060
Isoelectric Point	4
Localization	Cytoplasm
Comment	In the presence of the delta subunit, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling. May function in sigma factor switching. It is not equivalent to E. coli rpoE (sigma factor-24)
Sequence	MTMQVEYLDLISQAKEIAETQFKAEPFSFDAIWKEVVKHFKISKQDEPNLISRFYQDFLEDPNFVYLGERNWKLRDFMKF DEWNKISQAMFVTKEIFEEGYEDLSNKKKENEEEVNDFIMGNDGDDNSTGDEIVQGLINDFRDDNQ

Modification	Modified sequence	Relative start	Relative end	Amino acid
Oxidation	LRDFmK	74	80	M
Oxidation	LRDFmKFDEWNK	74	86	M
Oxidation	FDEWNKISQAmFVTK	80	95	M
Oxidation	ISQAmFVTk	86	95	M
Oxidation	ISQAmFVTK	86	95	M

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
10	104	94	- MYCGA6600	Mycoplasma gallisepticum	4	98	8e-18	40	199
3	146	143	- MG022	Mycoplasma genitalium	1	145	<1e-50	80	590
10	103	93	- MYPE10350	Mycoplasma penetrans	5	94	0.00000002	30.8511	119

COG	COG3343K
EC number	2.7.7.6
Gene ID	876869
GI	13507763
GO	Transcription
Home COG	K
InterPro	IPR007759\|DNA-directed RNA polymerase delta subunit
Old MP number	MP130
Pathway	Division, DNA maintenance
Pfam	PF05066
PID	g1673789
RefSeq	NP_109712.1
Swiss-Prot protein ID	RPOE_MYCPN
phylomeDB tree	RPOE_MYCPN
UniProt	P75090