MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene rbsC1 (MPN259)
Name 
rbsC1
Stable ID 
MPN259
Location 
309731 - 311284 +
Sequence 
    1  ATGAATGCTT TAAATTACCT CAAACACCGT TTTCTGTTTA GTAAAGACAA GTTTTGGTAC
   61  GCCCCTTTTA AACAAAAGCA ACGTCGGAGC ATCTACTCCA CCTTTTCGTT GATTGTTCTC
  121  TCCTTTATTG TTTCGTTCTT TTTAATAGTC GCCATTCCCG GCATTAAAGG CGGTACCTTC
  181  TTAGAAATCT TTACCCGTTT ATTTAAAGAT AGGATTAACA TCGAAAACTT TGCACGACAA
  241  ATTGCGATTT ACACCCTAGC TGCTTTGGCG TTTAGCTTTT GTATGAGTGT TGGGGTGTTT
  301  AACATTGGGA TTTCGGGACA AATGATGGCT GGCGCTAATT TTGGTTTCAT GATGATCCTC
  361  AAGGTTTTCC CCGAGTCATT CCGTCCTGCC TTTGGTGGTC AGATCATTAC CATCCTCTTA
  421  ATGATTCTAG GTAGTGTGAC CGTTGCTATG GTGGTAGCTG CTTTAAAGGT CTTCTTTAAG
  481  GTTAATGAAG TGGTTAGTGC CATTATGCTC AACTGGGTAA TTGTGCTGGT TAGCGCTTAT
  541  CTAGTGGGTA CTTACATTAA ACCGGAAAAA ACTGATACTT CCCAGTTTTA CTCGATTGAA
  601  CTACCGGATG CCTTTGCGCT GTATAACTTC TCTGATGTTC AACAAAAGTA TGGTTGATTA
  661  ACCTCGTTGG TTATTGCCAT AGCAGCTGCC ATATTCATTG CAGTTTTAAT GAAGTTCACC
  721  GTTTTTGGAC ACAAACTCAA GTCCACGGGT TTAAGTGTGA CGGGTTCGCA AGCCGCTGGT
  781  TACAGTGTTA AGAAGTATCA GTTCCTCTCG TTTGTGATTT CAGGAATCCT TTCTGGTTTA
  841  CTAGCAGCTG TAGTTTATAC CGCATCCTTT GAAAAGCAGT TAACGTTCTC AGATGTGGGT
  901  GACTTTGGGA TTACATCGGT ACCGATTACT GGGTTTGATG GAATTGCAAT TGGTTTAATT
  961  GCGCTCAACA GTCCAGCGCG AATTGTAATA GTTTCCACCA TTATTTCATT TGTAACCATT
 1021  GGTGCTAAAC CAGCGGGGTT AAACGCTGCT ACTGCGAGCT TGGTGTTGGG TATCATGATG
 1081  TATTTCGCTG CCATTTATAA CCTGATGATT TACATCAAGC CATGGCGCAT GATTGTCAAG
 1141  CTCAATATTA GTAAGATGAA CGAAGCGGCA TATGATGAAT TCCAAAACGA GATGGCTGCT
 1201  AATTTAGAAA CGCTGTCGTT CCAGCGCTTT TTAGATAAAC AAAAACGGAA GCATGATAAA
 1261  GAGCGAATGG TTTGGTTTGA CACCAAGCGC TTTGAGGAGT ACCAGAAAAA GAAGCAAGCA
 1321  ACTCTACAAA CCTTCCATGA AAATTCCTCG CAAAACTTAC TGCAGTACTG AAAGCAACAG
 1381  TTACTAGTAG CCGATGTAAA GCGATTAACT TTCAAATGAG ACTTTCTTAC CTTTAAACAC
 1441  CAGCAAAAGT ACATCTTACG CTGGTACAAG GGCAAGAACA AAAAGCAAAC AGCACTAGAA
 1501  AATGAGTTTG CTAGTTTAAA CGAAGCTATT AGTCAAAAAT TGGAGGAGAA ATAA
Download Sequence
Operon 
OP103
Operon location 
307970 - 315844
Protein (mpn259)
Name 
Sugar (ribose/galactose) ABC transporter permease subunit, but probably C-terminal
Stable ID 
Mpn259
Molecular Weight 
56870
Isoelectric Point 
10
Localization 
TMHMM
Comment -
Sequence 
MNALNYLKHRFLFSKDKFWYAPFKQKQRRSIYSTFSLIVLSFIVSFFLIVAIPGIKGGTFLEIFTRLFKDRINIENFARQ
IAIYTLAALAFSFCMSVGVFNIGISGQMMAGANFGFMMILKVFPESFRPAFGGQIITILLMILGSVTVAMVVAALKVFFK
VNEVVSAIMLNWVIVLVSAYLVGTYIKPEKTDTSQFYSIELPDAFALYNFSDVQQKYGWLTSLVIAIAAAIFIAVLMKFT
VFGHKLKSTGLSVTGSQAAGYSVKKYQFLSFVISGILSGLLAAVVYTASFEKQLTFSDVGDFGITSVPITGFDGIAIGLI
ALNSPARIVIVSTIISFVTIGAKPAGLNAATASLVLGIMMYFAAIYNLMIYIKPWRMIVKLNISKMNEAAYDEFQNEMAA
NLETLSFQRFLDKQKRKHDKERMVWFDTKRFEEYQKKKQATLQTFHENSSQNLLQYWKQQLLVADVKRLTFKWDFLTFKH
QQKYILRWYKGKNKKQTALENEFASLNEAISQKLEEK
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation mNALNYLK 1 9 M
Oxidation mVWFDTK 423 430 M
GENE/PROTEIN rbsC1 (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
73-363 PF02653 (IPR001851) ABC transporter permease Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006810'>'transport' == '' ? '': 'transport'; ('GO' == '' ? '': 'GO';:0006810)

Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016020'>'membrane' == '' ? '': 'membrane'; ('GO' == '' ? '': 'GO';:0016020)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005215'>'transporter' == '' ? '': 'transporter'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0005215)

0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
83 400 317 - MAG0150 Mycoplasma agalactiae 90 412 3e-20 25.9587 224
75 373 298 - MARTH_orf822 Mycoplasma arthritidis 80 376 2e-19 26.4516 217
75 461 386 - MCJ_007030 Mycoplasma conjunctivae 69 437 4e-21 27.3399 232
86 325 239 - Lactococcus lactis subsp. lactis KF147 63 294 0.00000000000003 27.9528 177
79 324 245 - Bacillus subtilis subsp. subtilis 47 277 0.000000000004 29.4821 162
79 324 245 - Bacillus subtilis subsp. subtilis 56 286 0.000000000003 29.6875 164
5 513 508 - MG120 Mycoplasma genitalium 8 517 <1e-50 60.1961 1564
81 378 297 - MCAP_0038 Mycoplasma capricolum subsp. capricolum 78 365 1e-26 26.7327 281
24 456 432 - MS53_0138 Mycoplasma synoviae 28 476 7e-18 24.2489 204
31 379 348 - MHP7448_0606 Mycoplasma hyopneumoniae 7448 28 369 2e-18 24.3169 209
28 380 352 - MMOB0380 Mycoplasma mobile 32 382 2e-24 28.9973 260
81 391 310 - MSC_0009 Mycoplasma mycoides subsp. mycoides SC 78 381 3e-27 27.8125 286
10 400 390 - MYCGA5880 Mycoplasma gallisepticum 9 404 <1e-50 39.6509 647
16 408 392 - MYPE5880 Mycoplasma penetrans 13 400 <1e-50 42.8934 762
77 325 248 - Mycoplasma pulmonis 75 314 2e-21 31.1024 237
External IDs
COG 
COG4603R
Gene ID 
876922
GI 
13507998
GO 
Carbohydrate transport and metabolism
Home COG 
G
InterPro 
IPR001851|Bacterial inner-membrane translocator
Old MP number 
MP574
Pathway 
Transporters, ABC superfamily
Pathway 
ribose/galactose transport, subunit
PDB homologs 
1nv8_A
PDB homologs 
1t43
PDB homologs 
1nv9_A
Pfam 
PF02653
PID 
g1674274
RefSeq 
NP_109947.1
Swiss-Prot protein ID 
Y259_MYCPN
phylomeDB tree 
Y259_MYCPN
UniProt 
P75515
Transcription
IMAGE BROWSERS

OPERON OP103 (Genomic Overview)
Region:307970-315844

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STRING image

STRING of Mpn259STRING legend

PDB image(s)

1nv8

PDB 1nv8

1t43

PDB 1t43

1nv9

PDB 1nv9
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