MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene gatB (MPN238)
Name 
gatB
Stable ID 
MPN238
Location 
290256 - 291692 +
Sequence 
    1  ATGATGATTA ACTTTGAAGC AATTATTGGG ATTGAGGTAC ACGTGGTCTT AAACACTGCT
   61  ACCAAAATGT TTTCCCCAGC GCCCAACCAA GCGCAAAACG CCACACCAAA CCAGTTCATA
  121  AACGCGATTG ATTTGGGCTT GCCTGGTACC ATGCCCCAGG TCAATGAGCA GGCGGTACAA
  181  AAGGCGTTAA TCCTTGCTGA CGCGCTCAAC ATGCAACGGG TACAGCCAGT CTTAGTGTTT
  241  GACCGTAAGC ACTACTTTTA CCAAGATCTA CCTAAGGGTT TTCAGATTAC CCAGCAAAAC
  301  TTTCCGATTG CGCAAAACGG TTACGTTGAA ATTGTGGAAA ACAACAAAGC GCAGCGGATT
  361  ATCATTGAAC GGTTTCACCT AGAGGAAGAT ACTGCCAAGC AACATTTTGT CGATGGGCAA
  421  ATTCTGCTCG ACTTTAACCG TTGTGGTGCA CCGCTAATTG AAGTAGTTAC CGCGCCCGTG
  481  ATTAAGAGTG CTAAGCAGTC TAAGGCATAC TTGCAAAAGC TACGTCAAAT TTTGATTGTT
  541  AACAACATTT CCAACGCTAA GCTCGAAGAT GGCTCGATGC GCAGTGACTG TAATGTATCA
  601  GTGCGCTTAA AGGGACAAAC TGCTTTTGGC ACCAAGGTCG AAATTAAGAA CATTAACTCA
  661  CTCAATAATG TGGAAAAGGC AATTGATTTG GAAATAGCAC GTCAAGTCAA AGCACTAATT
  721  AAAGGCGAAC CGGTTCAACA AGTTACCCTA ACTTATGACG ACAAAACCAA TACCAATGTC
  781  TTCATGCGTA AAAAGGACAA TTCAGTCGAT TACCGTTATT TCATTGAACC CAACATTATG
  841  AGCAGTAACA TTGATGAACT GCTACAAAAA CCCAACAAGG CCTTTAACTT AACTGAGTTC
  901  TTTACCAAGC TCAAGGAAGC TGGGGTTAAT GAGCAGCTAA ATCAATTAGT AGTCGATGAT
  961  CTGACTCTTT TTAATGCTTA CACCAAGATT AACAGTGTCA TTAACAGTCC CCAAGATACC
 1021  ATTCGCTGGT TGTGCATTGA GTTAATGGGA CAACTCAACA AGCTACAAAA ACCGCTCAAG
 1081  GACAAAACGA TTGATCACTT AATTATCCTA ATCCAAATGG TACAGAAGGG CACCGTGAAC
 1141  CAAAAACAAG CAAAGCAGTT AATTGAGTTA ATGTTAGACA ATGGGCAAGA CCCCCAATCG
 1201  CTGGCTAAAC TACACAACTT AGAACAGATA ACTGATGAAA AACAACTAAC GCAAATCATC
 1261  CAACAAATCT TTAAGGAAAA CGAGGGTGAA ATCCTTAAGA ACTTAGATCG AGTTGAACGA
 1321  ATTCAAAAGC TAATTATAGG TCAAGTTATG CAAAGAACCC ACAATCGCGC CAATCCCCAG
 1381  CAAGTTTTTA TAATTGTTGA AAAGTTGCTT CATGATTTCA GCGAAAGAGC AAGCTAA
Download Sequence
Operon 
OP97
Operon location 
287260 - 291652
Protein (mpn238)
Name 
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B) (EC 6.3.5.-)
Stable ID 
Mpn238
Molecular Weight 
52580
Isoelectric Point 
8
Localization 
Cytoplasm
Comment -
Sequence 
MMINFEAIIGIEVHVVLNTATKMFSPAPNQAQNATPNQFINAIDLGLPGTMPQVNEQAVQKALILADALNMQRVQPVLVF
DRKHYFYQDLPKGFQITQQNFPIAQNGYVEIVENNKAQRIIIERFHLEEDTAKQHFVDGQILLDFNRCGAPLIEVVTAPV
IKSAKQSKAYLQKLRQILIVNNISNAKLEDGSMRSDCNVSVRLKGQTAFGTKVEIKNINSLNNVEKAIDLEIARQVKALI
KGEPVQQVTLTYDDKTNTNVFMRKKDNSVDYRYFIEPNIMSSNIDELLQKPNKAFNLTEFFTKLKEAGVNEQLNQLVVDD
LTLFNAYTKINSVINSPQDTIRWLCIELMGQLNKLQKPLKDKTIDHLIILIQMVQKGTVNQKQAKQLIELMLDNGQDPQS
LAKLHNLEQITDEKQLTQIIQQIFKENEGEILKNLDRVERIQKLIIGQVMQRTHNRANPQQVFIIVEKLLHDFSERAS
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation ALILADALNmQR 62 74 M
Oxidation ALIKGEPVQQVTLTYDDKTNTNVFmR 238 264 M
Oxidation GEPVQQVTLTYDDKTNTNVFmR 242 264 M
Oxidation QLIELmLDNGQDPQSLAK 386 404 M
Oxidation LIIGQVmQR 444 453 M
GENE/PROTEIN gatB (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
2-471 TIGR00133 (IPR004413) Glutamyl-tRNA(Gln) amidotransferase, B subunit Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

0
6-286 PF02934 (IPR006075) Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016874'>'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016874)

0
6-297 SSF55931 (n.a.) NULL 0
13-472 PTHR11659 (IPR017959) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

0
145-159 PS01234 (IPR017958) Glutamyl-tRNA(Gln) amidotransferase, subunit B, co Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

0
305-398 SSF89095 (IPR003789) Aspartyl/glutamyl-tRNA amidotransferase subunit B- Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

0.0000000000000016
325-470 SM00845 (IPR018027) Asn/Gln amidotransferase Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

2.9e-36
327-470 PF02637 (IPR018027) Asn/Gln amidotransferase Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006412'>'translation' == '' ? '': 'translation'; ('GO' == '' ? '': 'GO';:0006412)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'ligase' == '' ? '': 'ligase';'>'carbon' == '' ? '': 'carbon';-'nitrogen' == '' ? '': 'nitrogen'; 'ligase' == '' ? '': 'ligase'; 'activity' == '' ? '': 'activity';

1.3e-34
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
2 472 470 - MAG7160 Mycoplasma agalactiae 1 469 <1e-50 40.1691 820
2 471 469 - Lactococcus lactis subsp. lactis KF147 11 482 <1e-50 36.5503 764
1 458 457 - MARTH_orf015 Mycoplasma arthritidis 1 458 <1e-50 39.375 684
4 470 466 - Caulobacter crescentus NA1000 14 495 <1e-50 30.297 554
2 462 460 - MCJ_001660 Mycoplasma conjunctivae 1 457 <1e-50 38.3158 753
4 458 454 - MHO_0450 Mycoplasma hominis 4 458 <1e-50 35.3556 665
3 462 459 - Bacillus subtilis subsp. subtilis 1 465 <1e-50 37.2093 776
3 462 459 - Bacillus subtilis subsp. subtilis 1 465 <1e-50 37.2093 776
2 478 476 - MG100 Mycoplasma genitalium 1 477 <1e-50 72.5367 1783
2 460 458 - MSC_0761 Mycoplasma mycoides subsp. mycoides SC 1 465 <1e-50 39.0295 829
1 418 417 - Rv3009c Mycobacterium tuberculosis 21 453 <1e-50 32.6531 565
2 460 458 - MCAP_0709 Mycoplasma capricolum subsp. capricolum 1 465 <1e-50 39.5349 829
2 459 457 - MS53_0091 Mycoplasma synoviae 1 457 <1e-50 39.6624 778
9 474 465 - MHP7448_0029 Mycoplasma hyopneumoniae 7448 9 466 <1e-50 38.7841 754
2 472 470 - MMOB3760 Mycoplasma mobile 1 470 <1e-50 37.5262 823
2 469 467 - LIC_10221 Leptospira interrogans serovar Copenhage 1 479 <1e-50 33.7449 670
1 459 458 - MYCGA6060 Mycoplasma gallisepticum 7 466 <1e-50 49.7854 1091
4 470 466 - MYPE2110 Mycoplasma penetrans 8 477 <1e-50 44.7479 967
2 472 470 - Mycoplasma pulmonis 1 470 <1e-50 39.9586 820
External IDs
COG 
COG0064J
EC number 
6.3.5.7
Gene ID 
877221
GI 
13507977
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR006107|GatB, central region
InterPro 
IPR003789|GatB/Yqey
InterPro 
IPR004413|Glutamyl-tRNA(Gln) amidotransferase B subunit
InterPro 
IPR006075|GatB N-terminal region
Old MP number 
MP593
Pathway 
Translation
PDB homologs 
1ng6_A
Pfam 
PF01162
Pfam 
PF02637
Pfam 
PF02934
PID 
g1674295
RefSeq 
NP_109926.1
Swiss-Prot protein ID 
GATB_MYCPN
phylomeDB tree 
GATB_MYCPN
UniProt 
P75533
Transcription
IMAGE BROWSERS

OPERON OP97 (Genomic Overview)
Region:287260-291652

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STRING image

STRING of Mpn238STRING legend

PDB image(s)

1ng6

PDB 1ng6
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