MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene ytqI (MPN140)
Name 
ytqI
Stable ID 
MPN140
Location 
179871 - 180845 +
Sequence 
    1  ATGAATAGCC AAGTACACCG CAAGGGCTCT ATTGCAGAAG CAGTTAGTGC CATCCAAGCT
   61  CATGATAAGA TCGTGATCTT CCACCACATT CGTCCTGATG GCGATTGTTT GGGCGCACAA
  121  CACGGCTTAG CGCGTTTAAT CCAAACTAAC TTTCCCCACA AGCAGGTCTT CTGTGTTGGT
  181  GATCCCAAAC ACAACTTTCC CTGATTGGAG ATGGTTTTCA CTCCAAAGGA ACAGATTACC
  241  CCGGAGTTAA TGCAACAAGC CTTAGCCGTT ATTGTTGATG CCAACTATAA GGAACGGATT
  301  GAGTGCCGGG ACTTATTAGA CCAAAACCAG TTTAAGGCAG TATTGCGGAT TGACCACCAC
  361  CCCAATGAGG ACGATCTCAA TACGACCCAT AACTTCGTTG ATGCGTCTTA CATTGCCGCG
  421  GCTGAACAAG TGGTAGATCT AGCGGTGCAG GCCAAATGGA AGCTTAGCCC CCCAGCGGCT
  481  ACGGCGCTGT ATCTAGGTAT TTATACAGAT AGTAATAGGT TTCTATATAG TAATACATCA
  541  TGAAGAACAC TATATCTAGG ATCTATGCTA TATAGAGCTC AAGCTAATAT AGCTAAGATC
  601  CATGATGAGT TAAACCACAC TTCCTTAAAG GACATCCAGT TTAAACAATA TGTCTTTAAA
  661  AACTTTCAGA CCTTTCAGAA TGTTATTTAC TTTGTGGCCG ATAAGAAGTT CCAAAAGAAA
  721  TTAAAGGTAA CACCCTTAGA ATGTGCACGG GTAAATATCC TAGCTAACAT TGAACAATTC
  781  CACATTTGGC TGTTCTTTAT AGAAGAGGGT AAGAACCACT ATCGGGTCGA ATTCCGTAGT
  841  AACGGAATTA ACGTACGCGA AGTAGCTTTA AAGTATGGTG GCGGGGGTCA TATTCAGGCC
  901  AGCGGTGCAG TTCTTAAAAG CAAGCGCGAC ATAATTCGTG TAGTTCAAGA TTGCCAAAAG
  961  CAAATTGCTG TATAA
Download Sequence
Operon 
OP65
Operon location 
179860 - 190300
Protein (mpn140)
Name 
Oligoribonuclease (DHH family phosphoesterases)
Stable ID 
Mpn140
Molecular Weight 
35640
Isoelectric Point 
9
Localization 
Cytoplasm
Comment Before orf4. B. subtilis nrnA/YtqI ortholog. It degrades RNA oligonucleotides in vitro with preference for 3-mers. In addition, YtqI has pAp-phosphatase and 3'-phosphoadenosine-5'-phosphosulfate (pApS) to produce AMP activity in vitro. Putative RecJ, recombination 5'-3'-exonuclease? (Nucleic Acids Res 2007, 35:4552)
Sequence 
MNSQVHRKGSIAEAVSAIQAHDKIVIFHHIRPDGDCLGAQHGLARLIQTNFPHKQVFCVGDPKHNFPWLEMVFTPKEQIT
PELMQQALAVIVDANYKERIECRDLLDQNQFKAVLRIDHHPNEDDLNTTHNFVDASYIAAAEQVVDLAVQAKWKLSPPAA
TALYLGIYTDSNRFLYSNTSWRTLYLGSMLYRAQANIAKIHDELNHTSLKDIQFKQYVFKNFQTFQNVIYFVADKKFQKK
LKVTPLECARVNILANIEQFHIWLFFIEEGKNHYRVEFRSNGINVREVALKYGGGGHIQASGAVLKSKRDIIRVVQDCQK
QIAV
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation HNFPWLEmVFTPK 64 77 M
Oxidation EQITPELmQQALAVIVDANYK 77 98 M
Oxidation EQITPELmQQALAVIVDANYKER 77 100 M
Oxidation TLYLGSmLYR 183 193 M
GENE/PROTEIN ytqI (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
11-313 PTHR13734:SF4 (n.a.) NULL 1.5e-33
11-313 PTHR13734 (n.a.) NULL 1.5e-33
17-168 PF01368 (IPR001667) Phosphoesterase, RecJ-like Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0030145'>'manganese' == '' ? '': 'manganese'; 'ion' == '' ? '': 'ion'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0030145)

9.6e-16
22-205 G3DSA:3.90.1640.10 (n.a.) NULL 1.8e-33
22-294 SSF64182 (n.a.) NULL 0
263-310 PF02272 (IPR003156) Phosphoesterase, DHHA1 Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676)

0.00000018
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
23 322 299 - MAG2360 Mycoplasma agalactiae 352 656 0.00000000004 21.8354 144
9 322 313 - MAG4440 Mycoplasma agalactiae 4 316 <1e-50 41.1392 594
9 322 313 - MAG4450 Mycoplasma agalactiae 4 315 <1e-50 43.6306 715
20 323 303 - MARTH_orf692 Mycoplasma arthritidis 336 644 0.0000000003 24.3077 137
13 322 309 - MARTH_orf830 Mycoplasma arthritidis 14 321 <1e-50 48.5531 768
8 322 314 - MARTH_orf831 Mycoplasma arthritidis 3 319 <1e-50 40.1254 608
7 291 284 - MCJ_000060 Mycoplasma conjunctivae 2 286 <1e-50 36.9338 516
7 319 312 - MCJ_000070 Mycoplasma conjunctivae 2 312 <1e-50 48.8818 790
18 304 286 - MCJ_001700 Mycoplasma conjunctivae 329 637 0.0000002 21.9048 113
22 252 230 - MHO_3930 Mycoplasma hominis 340 583 0.0000002 25 112
14 322 308 - MHO_5310 Mycoplasma hominis 9 321 <1e-50 41.2141 604
18 321 303 - MHO_5320 Mycoplasma hominis 19 320 <1e-50 44.2623 677
13 322 309 - Lactococcus lactis subsp. lactis KF147 3 306 9e-33 28.7975 334
30 319 289 - Bacillus subtilis subsp. subtilis 1 286 3e-38 32.5503 386
12 319 307 - Bacillus subtilis subsp. subtilis 3 306 6.00036e-42 32.2785 418
7 322 315 - MG190 Mycoplasma genitalium 2 315 <1e-50 60.7595 1075
23 302 279 - Rv2837c Mycobacterium tuberculosis 35 317 0.0000000000002 23.0508 170
18 322 304 - MCAP_0142 Mycoplasma capricolum subsp. capricolum 14 312 3e-35 32.1543 353
18 316 298 - MG371 Mycoplasma genitalium 16 311 8e-29 27.8146 296
14 322 308 - MS53_0337 Mycoplasma synoviae 11 319 <1e-50 44.1936 675
14 322 308 - MS53_0336 Mycoplasma synoviae 9 315 <1e-50 42.9032 619
14 322 308 - MS53_0279 Mycoplasma synoviae 11 318 <1e-50 47.8964 777
15 303 288 - MHP7448_0646 Mycoplasma hyopneumoniae 7448 326 637 0.00000000006 24.0122 143
21 321 300 - MHP7448_0006 Mycoplasma hyopneumoniae 7448 16 314 <1e-50 50.8251 806
7 324 317 - MHP7448_0005 Mycoplasma hyopneumoniae 7448 2 318 <1e-50 35.2201 537
19 304 285 - MMOB1730 Mycoplasma mobile 336 629 0.000000002 23.3766 129
18 322 304 - MMOB0670 Mycoplasma mobile 12 315 <1e-50 44.4444 716
15 322 307 - MSC_0148 Mycoplasma mycoides subsp. mycoides SC 11 312 4e-34 30.6709 344
16 322 306 - MYCGA4990 Mycoplasma gallisepticum 13 320 3e-30 28.6624 310
8 322 314 - MYCGA0370 Mycoplasma gallisepticum 3 316 <1e-50 58.0442 970
24 323 299 - MYPE5850 Mycoplasma penetrans 18 316 5e-32 28.9474 326
4 320 316 - Mycoplasma pulmonis 2 321 <1e-50 47.0588 717
23 190 167 - Mycoplasma pulmonis 344 523 0.000001 25.7895 107
9 322 313 - Mycoplasma pulmonis 4 314 <1e-50 39.0476 558
External IDs
COG 
COG0618R
E.coli names 
CysQ
Gene ID 
877340
GI 
13507879
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR003156|Phosphoesterase, DHHA1
InterPro 
IPR001667|Phosphoesterase, RecJ-like
Old MP number 
MP014
Pathway 
RNA metabolism
PDB homologs 
1k20_A
PDB homologs 
1i74_A
PDB homologs 
1k23_A
Pfam 
PF02272
Pfam 
PF01368
PID 
g1673660
RefSeq 
NP_109828.1
Swiss-Prot protein ID 
MGP1_MYCPN/B2BDZ5_MYCPN
phylomeDB tree No orthologous found
UniProt 
P75144/B2BDZ5
Transcription
IMAGE BROWSERS

OPERON OP65 (Genomic Overview)
Region:179860-190300

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STRING image

STRING of Mpn140STRING legend

PDB image(s)

1k20

PDB 1k20

1i74

PDB 1i74

1k23

PDB 1k23
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