MyMpn Project

1 TTGCAACACG CAAACACAAC CGCACTTTAC CTAATTGGCA GTGATGAATC TGGCAAGGGT 61 GATAGCTTTG GCGGAATTGC TGTAAGTGCT GTTTTAATTC ATAAGGACAA AATCAATACA 121 CTCCACCAAA TTGGTGTGGG GGATTCGAAG CAATTTAACG ATTACCAAAT TAAAGCTTTA 181 GTGCCTAAAA TCAAGGCAGC GGTTCATGAC CAAGTTACAT TAAGCGTTGA TGCTAAAACT 241 TACAACCAAC TAGTGCAAAG CTTTAAAAAT GTCAACGTAA TGTTGACCTT TTTGCACTGC 301 AAGGTGTACC ACCAGTTGTT GCAACAAAAC AAACTAACAG CACAACAATG TGACATTAGC 361 ATTGATGAGT TTGCTAATGT CAAACTGTTC ACCCAATACA CGCAAAAACT CACCAGCCTG 421 CAAAATGAGT TAAAGGAATT AGTTATTCCC AACCACTTCT TAATTAGGGG TGAGAGCTAT 481 TCTAAGGTAA TTGCCGCTGC TTCGATCTTA GCACGTGCTG CTTTTATTGC ACAAATGGAA 541 CAGTTAAGCC ACCAGTACGG TGTACAGTTT CCCAAGGGTA GTGCCCATGG CATTGTGGAA 601 GCGTTACACT TACTAAAAAC AAAAAGGCAG TTTCACAAGT TCGCCCAGTA CAGTGCGGTC 661 TGTAAAACTA CCTTTAAAAA TGTCGCTAGT TTCCTAAAGC AGCTGGCTTA G

MQHANTTALYLIGSDESGKGDSFGGIAVSAVLIHKDKINTLHQIGVGDSKQFNDYQIKALVPKIKAAVHDQVTLSVDAKT

YNQLVQSFKNVNVMLTFLHCKVYHQLLQQNKLTAQQCDISIDEFANVKLFTQYTQKLTSLQNELKELVIPNHFLIRGESY

SKVIAAASILARAAFIAQMEQLSHQYGVQFPKGSAHGIVEALHLLKTKRQFHKFAQYSAVCKTTFKNVASFLKQLA

Location (aa)	Name (InterPro ID)	Description	GO terms	Sequence	Evalue
9-233	SSF53098 (IPR012337)	Ribonuclease H-like	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676)		2.59941e-42
11-183	G3DSA:3.30.420.10 (n.a.)	NULL			2.6e-26
12-228	PF01351 (IPR001352)	Ribonuclease HII/HIII	Molecular Function: <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003723'>'RNA' == '' ? '': 'RNA'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003723) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004523'>'ribonuclease' == '' ? '': 'ribonuclease'; 'H' == '' ? '': 'H'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004523)		4.6e-21

Name	rnhC
Stable ID	MPN118
Location	151802 - 152512 -
Sequence	1 TTGCAACACG CAAACACAAC CGCACTTTAC CTAATTGGCA GTGATGAATC TGGCAAGGGT 61 GATAGCTTTG GCGGAATTGC TGTAAGTGCT GTTTTAATTC ATAAGGACAA AATCAATACA 121 CTCCACCAAA TTGGTGTGGG GGATTCGAAG CAATTTAACG ATTACCAAAT TAAAGCTTTA 181 GTGCCTAAAA TCAAGGCAGC GGTTCATGAC CAAGTTACAT TAAGCGTTGA TGCTAAAACT 241 TACAACCAAC TAGTGCAAAG CTTTAAAAAT GTCAACGTAA TGTTGACCTT TTTGCACTGC 301 AAGGTGTACC ACCAGTTGTT GCAACAAAAC AAACTAACAG CACAACAATG TGACATTAGC 361 ATTGATGAGT TTGCTAATGT CAAACTGTTC ACCCAATACA CGCAAAAACT CACCAGCCTG 421 CAAAATGAGT TAAAGGAATT AGTTATTCCC AACCACTTCT TAATTAGGGG TGAGAGCTAT 481 TCTAAGGTAA TTGCCGCTGC TTCGATCTTA GCACGTGCTG CTTTTATTGC ACAAATGGAA 541 CAGTTAAGCC ACCAGTACGG TGTACAGTTT CCCAAGGGTA GTGCCCATGG CATTGTGGAA 601 GCGTTACACT TACTAAAAAC AAAAAGGCAG TTTCACAAGT TCGCCCAGTA CAGTGCGGTC 661 TGTAAAACTA CCTTTAAAAA TGTCGCTAGT TTCCTAAAGC AGCTGGCTTA G
Download Sequence
Operon	OP534
Operon location	151740 - 152520

Name	Ribonuclease HIII
Stable ID	Mpn118
Molecular Weight	25960
Isoelectric Point	10
Localization	Cytoplasm
Comment	Endoribonucelase. Participates in DNA replication, possibly by mediating the removal of lagging-strand Okazaki fragment RNA primers
Sequence	MQHANTTALYLIGSDESGKGDSFGGIAVSAVLIHKDKINTLHQIGVGDSKQFNDYQIKALVPKIKAAVHDQVTLSVDAKT YNQLVQSFKNVNVMLTFLHCKVYHQLLQQNKLTAQQCDISIDEFANVKLFTQYTQKLTSLQNELKELVIPNHFLIRGESY SKVIAAASILARAAFIAQMEQLSHQYGVQFPKGSAHGIVEALHLLKTKRQFHKFAQYSAVCKTTFKNVASFLKQLA

Modification	Modified sequence	Relative start	Relative end	Amino acid
Oxidation	AAFIAQmEQLSHQYGVQFPK	173	193	M

Protein Start	Protein End	Hit Size	Orthologous	Organism	Orthologous Start	Orthologous End	Evalue	Identity	Score	Alignment
1	206	205	- MARTH_orf243	Mycoplasma arthritidis	1	205	0.00000000002	25.5924	146
11	200	189	- MHO_3300	Mycoplasma hominis	8	195	0.0000000000003	29.3532	160
11	136	125	-	Lactococcus lactis subsp. lactis KF147	78	200	0.0000000000003	33.3333	164
4	201	197	-	Bacillus subtilis subsp. subtilis	114	302	0.000000003	23.7374	134
4	201	197	-	Bacillus subtilis subsp. subtilis	88	276	0.000000003	24.6231	134
70	236	166	- MG199	Mycoplasma genitalium	2	166	1e-32	41.3174	327
10	137	127	- MS53_0619	Mycoplasma synoviae	22	145	0.00000001	31.0078	121
12	226	214	- MMOB1230	Mycoplasma mobile	9	216	0.00000000001	28.9593	146
5	99	94	- MYCGA4070	Mycoplasma gallisepticum	104	201	0.000000002	29.2929	129
11	198	187	-	Mycoplasma pulmonis	21	210	0.000000004	22.5641	126

COG	COG1039L
EC number	3.1.26.4
Gene ID	877266
GI	13507857
GO	DNA replication, recombination and repair
Home COG	L
InterPro	IPR012337\|Polynucleotidyl transferase, Ribonuclease H fold
InterPro	IPR001352\|Ribonuclease HII/HIII
Old MP number	MP036
Pathway	RNA
Pathway	Division
Pfam	PF01351
PID	g1673685
RefSeq	NP_109806.1
Swiss-Prot protein ID	Y118_MYCPN
phylomeDB tree	Y118_MYCPN
UniProt	P75446