MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene yabD (MPN009)
Name 
yabD
Stable ID 
MPN009
Location 
11275 - 12060 +
Sequence 
    1  ATGGAATACT TTGATGCGCA CTGTCACTTA AACTGTGAAC CCCTACTGGA ACAGCACGAA
   61  AAGAGTTTGG CCAACTTTAG GTTAATTGGG TTAAAGGCCA ATGTTGTGGG CACTAATTTA
  121  ACTAACTCCC AAATTGCGGT GAATTTAGCT AAACAGCACC CTGATTTACT CAAGGCAGGG
  181  GTGGGTATTC ACCCTAATGA TGTCCAGCTT TTTGATTTAA AAGCAGCGCA AGCAACACTA
  241  AAAAAATTAG TAAGTACGCA TCGCTCATTC ATTAGTTGTA TTGGTGAATA TGGCTTTGAT
  301  TACCACTACA CTAAGGACTA CATTACCCAA CAAGAACAGT TCTTTTTGAT GCAGTTCCAA
  361  CTAGCAGAAC AGTACCAGTT AGTGCACATG TTGCATGTCC GTGATGTGCA CGAAAGGATA
  421  TACGAAGTTT TGAAAAGGTT AAAACCTAAA CAACCAGTGG TGTTTCACTG TTTTAGTGAA
  481  GACACCAATA CTGCTTTAAA GCTGCTAACT TTAAGAGAAG TAGGACTAAA GGTTTATTTT
  541  TCGATTCCGG GGATTGTGAC CTTTAAGAAT GCGAAAAACT TGCAAGCCGC TTTATCAGTT
  601  ATTCCAACAG AGCTACTTTT AAGTGAAACC GATTCGCCTT ATTTAGCACC AGTACCTTTT
  661  CGGGGCAAAA CTAATTGACC GGAATGCGTT GTTCATACAG TGCAAACGAT TGCTGACATT
  721  AAGCAAGTTC CTTTAGCTGA AATAAAACAA GCGATTGTGC ATAACGCCAA GAAGTTATTT
  781  TGGTAG
Download Sequence
Operon 
OP2
Operon location 
2800 - 11960
Protein (mpn009)
Name 
Uncharacterized deoxyribonuclease MPN_009 (EC 3.1.21.-)
Stable ID 
Mpn009
Molecular Weight 
28710
Isoelectric Point 
8
Localization 
Cytoplasm
Comment TatD DNAase; Putative deoxyribonuclease
Sequence 
MEYFDAHCHLNCEPLLEQHEKSLANFRLIGLKANVVGTNLTNSQIAVNLAKQHPDLLKAGVGIHPNDVQLFDLKAAQATL
KKLVSTHRSFISCIGEYGFDYHYTKDYITQQEQFFLMQFQLAEQYQLVHMLHVRDVHERIYEVLKRLKPKQPVVFHCFSE
DTNTALKLLTLREVGLKVYFSIPGIVTFKNAKNLQAALSVIPTELLLSETDSPYLAPVPFRGKTNWPECVVHTVQTIADI
KQVPLAEIKQAIVHNAKKLFW
Post translational modifications
No post translational modifications were found
GENE/PROTEIN yabD (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-260 SSF51556 (n.a.) NULL 0
1-260 G3DSA:3.20.20.140 (n.a.) NULL 0
1-261 PIRSF005902 (IPR012278) Deoxyribonuclease, TatD Mg-dependent 0
3-11 PS01137 (IPR018228) Deoxyribonuclease, TatD-related, conserved site Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease';'>'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease'; 'activity' == '' ? '': 'activity';

0
3-261 TIGR00010 (IPR015991) Deoxyribonuclease, TatD Mg-dependent, prokaryote Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease';'>'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease'; 'activity' == '' ? '': 'activity';

0
4-260 PF01026 (IPR001130) Deoxyribonuclease, TatD-related Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease';'>'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease'; 'activity' == '' ? '': 'activity';

0
25-261 PTHR10060 (IPR015992) Deoxyribonuclease, TatD Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease';'>'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease'; 'activity' == '' ? '': 'activity';

1.30321e-43
197-213 PS01091 (IPR018228) Deoxyribonuclease, TatD-related, conserved site Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease';'>'endodeoxyribonuclease' == '' ? '': 'endodeoxyribonuclease'; 'activity' == '' ? '': 'activity';

0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
5 260 255 - b1100 Escherichia coli 5 254 4e-25 32.0611 270
3 260 257 - b4378 Escherichia coli 5 256 6e-17 25.6604 199
35 260 225 - b4483 Escherichia coli 34 256 0.000000000000005 28.0172 183
1 260 259 - MARTH_orf006 Mycoplasma arthritidis 1 251 1e-25 32.2097 268
1 260 259 - MAG0520 Mycoplasma agalactiae 3 249 3e-22 28.3582 239
35 241 206 - MCJ_000280 Mycoplasma conjunctivae 183 384 0.00000000000005 29.8165 168
4 260 256 - MCAP_0768 Mycoplasma capricolum subsp. capricolum 8 263 2e-34 32.7206 344
4 260 256 - MCAP_0124 Mycoplasma capricolum subsp. capricolum 7 261 8e-19 27.4436 210
4 260 256 - MYCGA7180 Mycoplasma gallisepticum 6 260 <1e-50 38.9105 463
1 261 260 - MG009 Mycoplasma genitalium 1 261 <1e-50 64.3678 938
2 260 258 - MHP7448_0653 Mycoplasma hyopneumoniae 7448 152 406 0.000000000000003 27.4368 179
1 260 259 - MHO_0090 Mycoplasma hominis 1 251 6e-26 31.9549 270
35 260 225 - MMOB5630 Mycoplasma mobile 36 254 5e-23 29.2576 246
4 260 256 - MSC_0947 Mycoplasma mycoides subsp. mycoides SC 8 262 9e-36 34.8148 356
1 260 259 - MYPE8110 Mycoplasma penetrans 2 256 3.00004e-41 35.249 404
4 250 246 - Caulobacter crescentus NA1000 6 246 3e-20 28.8 227
5 259 254 - LIC_13481 Leptospira interrogans serovar Copenhage 6 259 2e-24 30.2682 264
49 260 211 - MS53_0363 Mycoplasma synoviae 56 265 5e-22 31.8386 237
59 260 201 - Rv1008 Mycobacterium tuberculosis 59 257 9e-19 28.2297 215
1 260 259 - Lactococcus lactis subsp. lactis KF147 1 253 3e-31 30.916 321
4 260 256 - Bacillus subtilis subsp. subtilis 3 252 4e-27 30.5019 288
4 260 256 - Bacillus subtilis subsp. subtilis 3 252 5e-27 30.5019 288
1 260 259 - Mycoplasma pulmonis 1 250 1e-21 29.3893 235
5 260 255 - Mycoplasma pulmonis 188 433 3e-19 28.1369 214
External IDs
COG 
COG0084L
EC number 
3.1.21.-
Gene ID 
877360
GI 
13507748
GO 
DNA replication, recombination and repair
Home COG 
L
InterPro 
IPR001130|TatD-related deoxyribonuclease
InterPro 
IPR012278|Mg-dependent DNase, TatD
Old MP number 
MP145
Pathway 
DNA maintenance and repair
PDB homologs 
1j6o_A
PDB homologs 
1bf6_A
PDB homologs 
1pta_
Pfam 
PF01026
PID 
g1673805
RefSeq 
NP_109697.1
Swiss-Prot protein ID 
Y009_MYCPN
phylomeDB tree 
Y009_MYCPN
UniProt 
P78005
Transcription
IMAGE BROWSERS

OPERON OP2 (Genomic Overview)
Region:2800-11960

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STRING image

STRING of Mpn009STRING legend

PDB image(s)

1j6o

PDB 1j6o

1bf6

PDB 1bf6

1pta

PDB 1pta
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