MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene deaD (MPN623)
Name 
deaD
Stable ID 
MPN623
Location 
749850 - 751202 +
Sequence 
    1  ATGGACTCAA CTTTTAATGA ACTAGGCGTC TCTCCTGCCT TAATTGCCAC ACTCAAAGAT
   61  AACAACATTA ACCAACCAAC TACGATTCAA CAACTGGCTA TTCCCCAGTT TCTCCAACAT
  121  CAAAACCTGA TTGTCCACTC CCCCACCGGC ACTGGTAAAA CCGCTGTTTT TGGCATTCCG
  181  GTCATTGAAA CACTCCTTAA AAAACCAAGT AAAGGTACGA CCCAAACATT GGTAGTTGCA
  241  CCTACCCGTG AACTGGCCGA ACAGATTAAA ACCACCTTTA TTAACTTTGC TAAACACACC
  301  CATTTAAAGG TAGTGAGCTT AATTGGTGGC ATCCCCATTT GACAACAACT CAAACAACTA
  361  GAAAACCAAC CAGAAATAGT TGTGGGCACT ATGGGGCGGG TGATGGACCT GTTAGAACGG
  421  GGTGTAATTA AGTTTGAACA CCTAGAACAC CTCATTATTG ACGAGGTTGA CCTAATGCTC
  481  GACCGTGGTT TTAAGAGAAA ACTGTTTGAT CTGTTAAGTC GCATTGAAAA GTTTGAACAA
  541  ATTGCGGTTT ATTCTGCTAG TTACAATGAA GAGACAATTG AAACAGCTAA ACAAATTACC
  601  AAGAATGGTA TTTTCCTAGC AGCACCAGAA TTAAAACAAA ATGCCCCTGA ACCAGATAAC
  661  AAACTCATTG ATCAATTTGT TTGTTATCTT TTTTCTAACC GGAAGAAACA AGCCCTCTAT
  721  TCTTTGGTAT CGCAAACTAG AGCGAAGTCG ATTATTGTTT TTTGTGACAC CAAGAAGTTA
  781  GTTGATGAGC TGTGCATCTT CTTGCGCAAG AATGATGTCA AAACTTATCC ACTTCACGGG
  841  GACAAAGCGC AGTTCATTCG CGAACGCAAC TTAAAGCTGT TTGCTAACAC AACTGCTCCT
  901  ATAGTATTAG TAACAACTGA TCTAATCGGT CGTGGTATCC ATGTGGAAGG GGTGGACATG
  961  GTAGTCAACT ATTCCGCTTG TGTAAACTTT GAAACTTATT TGCACCGGAT GGGTCGCACA
 1021  GGACGGAACA ACCACAAGGG CTCATGTATT ACCTTCTGTA CCTCACACGA AAAGCAAGCA
 1081  TTTTTAAAGT TATTAGAACA AGTTAACGAC AAGCGCATTA GCCCTCTCCG CCCCATGCGC
 1141  TTAAGGTTAA TTCCCTTGAA GTGCAAAACC CAACCCAAGA AGGGGAAACT TTCCTTACAG
 1201  TCAGTGCAAA AGATTTACGT CAATCCTCGT TCCAATGGCA CCTTTAAACG CGTACCTTTA
 1261  GCGGGGGATT TGTTTAAAAG CCGGATGCGT CAACCTGAGC GGGACATGCA AAAGAACAAA
 1321  TTGCATGACA GTGATTGACA AAGCAATATG TAA
Download Sequence
Operon 
OP248
Operon location 
749790 - 751400
Protein (mpn623)
Name 
Probable ATP-dependent RNA helicase (EC 3.6.1.-)
Stable ID 
Mpn623
Molecular Weight 
49500
Isoelectric Point 
10
Localization 
Cytoplasm
Comment similar to ATP-dependent RNA helicase deaD
Sequence 
MDSTFNELGVSPALIATLKDNNINQPTTIQQLAIPQFLQHQNLIVHSPTGTGKTAVFGIPVIETLLKKPSKGTTQTLVVA
PTRELAEQIKTTFINFAKHTHLKVVSLIGGIPIWQQLKQLENQPEIVVGTMGRVMDLLERGVIKFEHLEHLIIDEVDLML
DRGFKRKLFDLLSRIEKFEQIAVYSASYNEETIETAKQITKNGIFLAAPELKQNAPEPDNKLIDQFVCYLFSNRKKQALY
SLVSQTRAKSIIVFCDTKKLVDELCIFLRKNDVKTYPLHGDKAQFIRERNLKLFANTTAPIVLVTTDLIGRGIHVEGVDM
VVNYSACVNFETYLHRMGRTGRNNHKGSCITFCTSHEKQAFLKLLEQVNDKRISPLRPMRLRLIPLKCKTQPKKGKLSLQ
SVQKIYVNPRSNGTFKRVPLAGDLFKSRMRQPERDMQKNKLHDSDWQSNM
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation QLENQPEIVVGTmGR 119 134 M
Methylation kGKLSLQSVQK 394 405 K
GENE/PROTEIN deaD (Domains Overview)
Click on the features to jump to domain info

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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
3-31 PS51195 (IPR014014) RNA helicase, DEAD-box type, Q motif 0
3-206 G3DSA:3.40.50.300 (n.a.) NULL 0
4-384 PTHR10967 (n.a.) NULL 0
22-226 SM00487 (IPR014001) DEAD-like helicase, N-terminal 0
27-193 PF00270 (IPR011545) DNA/RNA helicase, DEAD/DEAH box type, N-terminal Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008026'>'ATP' == '' ? '': 'ATP';-'dependent' == '' ? '': 'dependent'; 'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0008026)

2.2e-40
34-206 PS51192 (IPR014021) Helicase, superfamily 1/2, ATP-binding domain 0
72-367 SSF52540 (n.a.) NULL 0
225-376 G3DSA:3.40.50.300 (n.a.) NULL 1.2e-40
234-384 PS51194 (IPR001650) Helicase, C-terminal Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004386'>'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004386) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524)

0
262-344 SM00490 (IPR001650) Helicase, C-terminal Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004386'>'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004386) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524)

6.19999e-24
267-343 PF00271 (IPR001650) Helicase, C-terminal Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003676'>'nucleic' == '' ? '': 'nucleic'; 'acid' == '' ? '': 'acid'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0003676) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004386'>'helicase' == '' ? '': 'helicase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004386) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005524'>'ATP' == '' ? '': 'ATP'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0005524)

0.0000000000000037
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
5 369 364 - Caulobacter crescentus NA1000 4 366 <1e-50 31.7073 481
3 358 355 - Caulobacter crescentus NA1000 2 354 <1e-50 33.8889 503
12 347 335 - Caulobacter crescentus NA1000 8 341 3e-33 29.2754 342
242 367 125 - Lactococcus lactis subsp. lactis KF147 222 346 0.0000000004 28.5714 141
5 371 366 - Lactococcus lactis subsp. lactis KF147 3 360 <1e-50 37.1274 534
5 364 359 - Lactococcus lactis subsp. lactis KF147 3 356 7e-39 30 388
3 367 364 - Bacillus subtilis subsp. subtilis 2 357 <1e-50 32.6087 461
2 364 362 - Bacillus subtilis subsp. subtilis 12 369 8e-40 30.0546 401
243 367 124 - Bacillus subtilis subsp. subtilis 186 309 0.0000004 26.4 119
21 369 348 - Bacillus subtilis subsp. subtilis 22 360 7e-34 25.779 349
25 371 346 - Bacillus subtilis subsp. subtilis 11 348 <1e-50 34.1954 469
1 371 370 - Bacillus subtilis subsp. subtilis 1 362 <1e-50 33.3333 484
3 367 364 - Bacillus subtilis subsp. subtilis 2 357 <1e-50 32.0652 453
21 369 348 - Bacillus subtilis subsp. subtilis 22 360 6e-34 25.779 350
243 367 124 - Bacillus subtilis subsp. subtilis 225 348 0.000003 26.4 112
2 364 362 - Bacillus subtilis subsp. subtilis 3 360 1e-39 30.0546 400
2 357 355 - MT3307 Mycobacterium tuberculosis 9 378 <1e-50 32.0106 452
5 353 348 - b3780 Escherichia coli 11 360 1e-36 30.3621 372
2 359 357 - b3162 Escherichia coli 5 355 <1e-50 33.3333 513
30 367 337 - b3822 Escherichia coli 30 354 0.0000008 22.0339 115
3 357 354 - b2576 Escherichia coli 4 356 2e-40 32.0334 405
3 359 356 - b1343 Escherichia coli 5 351 <1e-50 32.9609 474
4 358 354 - b0797 Escherichia coli 2 355 <1e-50 31.1111 491
1 450 449 - MG425 Mycoplasma genitalium 1 449 <1e-50 64.4444 1593
27 365 338 - MG308 Mycoplasma genitalium 20 332 4e-19 23.5465 213
3 369 366 - Rv1253 Mycobacterium tuberculosis 13 369 1.4013e-45 31.1653 448
5 347 342 - MCAP_0500 Mycoplasma capricolum subsp. capricolum 3 342 1e-39 31.4121 392
5 357 352 - MMOB2800 Mycoplasma mobile 3 353 1e-39 30 391
5 347 342 - MSC_0469 Mycoplasma mycoides subsp. mycoides SC 3 342 5e-38 30.8357 378
5 369 364 - LIC_13230 Leptospira interrogans serovar Copenhage 11 367 <1e-50 34.8774 501
30 352 322 - LIC_12961 Leptospira interrogans serovar Copenhage 36 355 0.000000000002 23.6467 162
5 357 352 - LIC_10738 Leptospira interrogans serovar Copenhage 3 350 1.4013e-45 32.6816 450
17 366 349 - MYCGA5040 Mycoplasma gallisepticum 14 360 2e-36 28.6111 366
22 356 334 - MYPE8030 Mycoplasma penetrans 18 348 2e-27 28.2051 288
5 367 362 - Mycoplasma pulmonis 3 357 2.94273e-44 30.303 432
External IDs
COG 
COG0513LKJ
EC number 
3.6.1.-
Gene ID 
877188
GI 
13508362
GO 
Transcription/ Translation, ribosomal structure and biogenesis
Home COG 
KJ
InterPro 
IPR014014|DEAD-box RNA helicase Q motif
InterPro 
IPR014021|Helicase superfamily 1 and 2 ATP-binding
InterPro 
IPR014001|DEAD-like helicases, N-terminal
InterPro 
IPR011545|DEAD/DEAH box helicase, N-terminal
InterPro 
IPR001650|Helicase, C-terminal
Old MP number 
MP219
Pathway 
Translation, Transcription?
PDB homologs 
1A1V-A
PDB homologs 
1fuu_A
PDB homologs 
1hv8_A
PDB homologs 
1ugz
Pfam 
PF00270
Pfam 
PF00271
Pfam 
PF04851
PID 
g1673885
RefSeq 
NP_110312.1
Swiss-Prot protein ID 
Y623_MYCPN
phylomeDB tree 
Y623_MYCPN
UniProt 
P75172
Transcription
IMAGE BROWSERS

OPERON OP248 (Genomic Overview)
Region:749790-751400

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STRING image

STRING of Mpn623STRING legend

PDB image(s)

1A1V

PDB 1A1V

1fuu

PDB 1fuu

1hv8

PDB 1hv8

1ugz

PDB 1ugz
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