MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene pdhB (MPN392)
Name 
pdhB
Stable ID 
MPN392
Location 
469374 - 470357 -
Sequence 
    1  ATGTCAAAAA CAATTCAAGC AAATAACATT GAAGCGTTGG GTAACGCAAT GGATCTAGCG
   61  TTAGAGCGCG ACCCCAACGT TGTTTTATAC GGTCAGGATG CTGGCTTTGA AGGTGGTGTG
  121  TTCCGTGCTA CTAAGGGTTT ACAAAAGAAG TACGGTGAGG AGCGTGTTTG GGACTGTCCG
  181  ATTGCCGAAG CAGCTATGGC TGGTATTGGT GTGGGTGCTG CCATTGGTGG ACTTAAACCA
  241  ATCGTGGAAA TCCAGTTCTC CGGTTTTTCT TTCCCCGCAA TGTTCCAAAT TTTTACCCAC
  301  GCAGCACGGA TCCGCAACCG TTCTCGCGGT GTGTATACCT GTCCGATTAT TGTCCGCATG
  361  CCAATGGGTG GTGGGATTAA AGCACTTGAA CACCACAGTG AGACCTTGGA AGCGATTTAC
  421  GGTCAAATTG CCGGACTTAA AACAGTGATG CCGTCCAACC CTTACGACAC CAAGGGCTTA
  481  TTCTTAGCAG CAGTGGAATC ACCTGACCCT GTGGTCTTCT TTGAACCAAA GAAGCTGTAC
  541  CGTGCCTTCC GTCAGGAAAT TCCAGCAGAT TATTACACTG TGCCAATTGG TCAAGCTAAC
  601  TTAATTAGCC AGGGTAACAA CCTTACTATT GTTAGTTACG GTCCTACCAT GTTTGACCTA
  661  ATTAACATGG TCTATGGGGG TGAGTTGAAG GACAAGGGCA TTGAACTCAT TGACTTGCGT
  721  ACCATTTCCC CTTGAGACAA GGAAACGGTG TTTAACTCCG TGAAGAAAAC CGGGCGCTTG
  781  CTCGTAGTTA CCGAAGCGGC TAAAACCTTT ACCACCAGTG GGGAAATTAT TGCATCGGTA
  841  ACTGAAGAAT TATTTAGCTA TCTCAAGGCA GCCCCACAAC GGGTAACCGG TTGGGACATT
  901  GTGGTACCGT TAGCACGGGG TGAACACTAC CAGTTCAATT TAAATGCCCG CATTTTGGAA
  961  GCTGTTAACC AACTTTTAAA GTAA
Download Sequence
Operon 
OP437
Operon location 
469365 - 472927
Protein (mpn392)
Name 
Pyruvate dehydrogenase E1 component subunit beta (EC 1.2.4.1)
Stable ID 
Mpn392
Molecular Weight 
35970
Isoelectric Point 
7
Localization 
Cytoplasm
Comment -
Sequence 
MSKTIQANNIEALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKP
IVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGL
FLAAVESPDPVVFFEPKKLYRAFRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGIELIDLR
TISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLARGEHYQFNLNARILE
AVNQLLK
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation SKTIQANNIEALGNAmDLALERDPNVVLYGQDAGFEGGVFR 2 43 M
Oxidation TIQANNIEALGNAmDLALER 4 24 M
Oxidation tIQANNIEALGNAmDLALERDPNVVLYGQDAGFEGGVFR 4 43 M
Oxidation TIQANNIEALGNAmDLALERDPNVVLYGQDAGFEGGVFR 4 43 M
Oxidation mPmGGGIk 120 128 M
Oxidation MPmGGGIK 120 128 M
Oxidation mPMGGGIK 120 128 M
Oxidation mPmGGGIK 120 128 M
Oxidation MPmGGGIk 120 128 M
Oxidation ALEHHSETLEAIYGQIAGLKTVmPSNPYDTK 128 159 M
Oxidation TVmPSNPYDTK 148 159 M
Oxidation TVmPSNPYDTk 148 159 M
Oxidation TVmPSNPYDTKGLFLAAVESPDPVVFFEPK 148 178 M
GENE/PROTEIN pdhB (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
5-196 SSF52518 (n.a.) NULL 0
7-182 SM00861 (IPR005475) Transketolase-like, pyrimidine-binding domain 0
7-199 G3DSA:3.40.50.970 (n.a.) NULL 0
9-181 PF02779 (IPR005475) Transketolase-like, pyrimidine-binding domain 0
40-326 PTHR11624 (n.a.) NULL 0
40-326 PTHR11624:SF21 (n.a.) NULL 0
191-327 SSF52922 (IPR009014) Transketolase, C-terminal/Pyruvate-ferredoxin oxid Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003824'>'catalytic' == '' ? '': 'catalytic'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003824)

1.3e-27
197-316 PF02780 (IPR005476) Transketolase, C-terminal Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003824'>'catalytic' == '' ? '': 'catalytic'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003824)

4.3e-23
201-323 G3DSA:3.40.50.920 (IPR015941) Transketolase-like, C-terminal Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003824'>'catalytic' == '' ? '': 'catalytic'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003824)

5.4e-28
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
3 326 323 - MAG0940 Mycoplasma agalactiae 2 327 <1e-50 55.2147 954
5 327 322 - MCJ_000680 Mycoplasma conjunctivae 7 329 <1e-50 55.7276 1006
8 326 318 - MCAP_0226 Mycoplasma capricolum subsp. capricolum 5 325 <1e-50 51.2346 895
1 326 325 - MYCGA4840 Mycoplasma gallisepticum 1 324 <1e-50 64.1104 1098
1 327 326 - MG273 Mycoplasma genitalium 1 326 <1e-50 84.4037 1481
2 327 325 - MHP7448_0116 Mycoplasma hyopneumoniae 7448 4 333 <1e-50 53.9394 988
5 325 320 - MMOB5830 Mycoplasma mobile 4 323 <1e-50 56.3467 1011
8 326 318 - MSC_0266 Mycoplasma mycoides subsp. mycoides SC 5 325 <1e-50 50.9259 882
2 325 323 - MYPE5090 Mycoplasma penetrans 3 328 <1e-50 58.8415 1042
11 327 316 - LIC_11898 Leptospira interrogans serovar Copenhage 8 324 7.9874e-44 31.1321 431
3 325 322 - MS53_0273 Mycoplasma synoviae 4 325 <1e-50 55.5556 941
10 327 317 - MT2571 Mycobacterium tuberculosis 29 346 <1e-50 35.1097 534
10 309 299 - Lactococcus lactis subsp. lactis KF147 7 306 <1e-50 40.0662 603
11 327 316 - Caulobacter crescentus NA1000 132 442 6.02558e-44 34.375 433
6 327 321 - Bacillus subtilis subsp. subtilis 3 324 <1e-50 38.8889 651
6 327 321 - Bacillus subtilis subsp. subtilis 3 324 <1e-50 38.8889 650
10 326 316 - Bacillus subtilis subsp. subtilis 7 324 <1e-50 39.9371 626
10 326 316 - Bacillus subtilis subsp. subtilis 4 321 <1e-50 39.9371 625
1 305 304 - Bacillus subtilis subsp. subtilis 1 314 <1e-50 36.0502 503
11 305 294 - Bacillus subtilis subsp. subtilis 3 308 <1e-50 36.246 497
1 327 326 - Mycoplasma pulmonis 1 329 <1e-50 58.0547 1022
External IDs
COG 
COG0022C
EC number 
1.2.4.1
Gene ID 
877125
GI 
13508131
GO 
Energy production and conversion
Home COG 
C
InterPro 
IPR009014|Transketolase, C-terminal-like
InterPro 
IPR005476|Transketolase, C-terminal
InterPro 
IPR005475|Transketolase, central region
Old MP number 
MP446
Pathway 
Metabolism energy
PDB homologs 
1umc_B
PDB homologs 
1umb_B
PDB homologs 
1um9_B
PDB homologs 
1AYO-A
Pfam 
PF02779
Pfam 
PF02780
PID 
g1674134
RefSeq 
NP_110080.1
Swiss-Prot protein ID 
ODPB_MYCPN
phylomeDB tree 
ODPB_MYCPN
UniProt 
P75391
Transcription
IMAGE BROWSERS

OPERON OP437 (Genomic Overview)
Region:469365-472927

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STRING image

STRING of Mpn392STRING legend

PDB image(s)

1umc

PDB 1umc

1umb

PDB 1umb

1um9

PDB 1um9

1AYO

PDB 1AYO
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All data provided for download in the MyMpn database is free to use. Upon doing so, please cite the original data source and the MyMpn database
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