MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene yidA (MPN383)
Name 
yidA
Stable ID 
MPN383
Location 
459530 - 460378 -
Sequence 
    1  ATGAAACCAA AAGTACAAAA CTTAATTTTT GACCTCGATG GTACTTTATT GTCTTGGGGT
   61  CATGAACCAC TACCACAAAC TGTTACTTTT CTCAAAGAGT TGCAAAAGCA GGGGTTTAAA
  121  ATTACCTTTG CGACTGGGCG CAGTCATATC TTAATCCGCA ATACCACTCA GTTTATTCAA
  181  CCTGATCTAC CGGTTATTTC CTCTAACGGT GCTTTAATTT ATGACTTTGC TCGGGAAAAA
  241  GCGCTGCATA TGACCCAGTT AGCACCCCAA AGTGTGGTAC CCATTATGCG TTTACTGTTG
  301  CAATTGGAAG AAAGCTTTTG CATTTACACT GATAAAAAGG TGTTTGGTTT TGAAAAACCC
  361  GGTATACCTT GCAAACGGTT ACGCACTACT CAAAGCAAAA TTGTAGAACC TGACATTACA
  421  CAAAATAACT TTACCATTAA TCCGTTAACT GATGCTAGCA AGTTTGATTT TGCCACACAA
  481  AACATTACCA AGATTCTTTT AATCACTGAA GACAGGGGTC GCATTAGTAA AATAACCAAA
  541  CATCTCGATG CGATTGAAAA CATTAGCTAT GTCAGTTCTA TGACCTTTGC GCTTGACATT
  601  ATGCACAAAG ATGTCAATAA GGCATACGGT CTCAAAGCAT TAGAACAGCA AACCGGTTTA
  661  GATCCCCAAA TGACCATGGT CTTTGGCGAT GGGGACAATG ATGTGGAAAT TTTTAATGCT
  721  GTCAAGTACT CTGTCGCAAT GGCTAACGGT AGTGATTTAG CAAAACAAAA CGCGACCTTT
  781  ATTTCGGAGT TTGATAATGA CCATGATGGC ATTTATCACT TTTTGCAATG CTTTCTAAAA
  841  ATTGAGTAA
Download Sequence
Operon 
OP441
Operon location 
458600 - 463855
Protein (mpn383)
Name 
nucleotidase, also common to HADs (works well also with CoA and NADP)
Stable ID 
Mpn383
Molecular Weight 
31020
Isoelectric Point 
6
Localization 
Cytoplasm
Comment Considering the relationship of this subfamily to the other known members of the HAD-IIB subfamily (TIGR01484), sucrose and trehalose phosphatases and phosphomannomutase, it seems a reasonable hypothesis that these enzymes act on phosphorylated sugars
Sequence 
MKPKVQNLIFDLDGTLLSWGHEPLPQTVTFLKELQKQGFKITFATGRSHILIRNTTQFIQPDLPVISSNGALIYDFAREK
ALHMTQLAPQSVVPIMRLLLQLEESFCIYTDKKVFGFEKPGIPCKRLRTTQSKIVEPDITQNNFTINPLTDASKFDFATQ
NITKILLITEDRGRISKITKHLDAIENISYVSSMTFALDIMHKDVNKAYGLKALEQQTGLDPQMTMVFGDGDNDVEIFNA
VKYSVAMANGSDLAKQNATFISEFDNDHDGIYHFLQCFLKIE
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Oxidation ALHmTQLAPQSVVPImR 81 98 M
Oxidation ALHmTQLAPQSVVPIMR 81 98 M
Oxidation ALEQQTGLDPQMTmVFGDGDNDVEIFNAVK 213 243 M
Oxidation ALEQQTGLDPQmTmVFGDGDNDVEIFNAVK 213 243 M
Oxidation ALEQQTGLDPQmTMVFGDGDNDVEIFNAVK 213 243 M
Oxidation YSVAmANGSDLAK 243 256 M
GENE/PROTEIN yidA (Domains Overview)
Click on the features to jump to domain info

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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
4-282 SSF56784 (n.a.) NULL 0
5-83 G3DSA:3.40.50.1000 (n.a.) NULL 1.2e-38
7-18 PS01228 (IPR000150) Cof protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787)

0
7-247 TIGR01484 (IPR006379) HAD-superfamily hydrolase, subfamily IIB Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003824'>'catalytic' == '' ? '': 'catalytic'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003824)

0.00000000000000730001
7-275 TIGR00099 (IPR000150) Cof protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787)

0
8-275 PF08282 (IPR013200) HAD superfamily hydrolase-like, type 3 0
144-200 G3DSA:3.30.1240.10 (n.a.) NULL 0.0000086
201-280 G3DSA:3.40.50.1000 (n.a.) NULL 1.2e-38
228-250 PS01229 (IPR000150) Cof protein Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0008152'>'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0008152)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016787'>'hydrolase' == '' ? '': 'hydrolase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016787)

0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
8 279 271 - b0766 Escherichia coli 6 271 3e-17 25.3623 203
5 279 274 - b0822 Escherichia coli 3 263 0.0000000000001 23.913 172
5 279 274 - b3697 Escherichia coli 3 268 0.0000000000003 25 168
11 250 239 - b3826 Escherichia coli 8 234 0.00000001 22.3577 128
11 282 271 - b0844 Escherichia coli 9 266 0.0000001 23.1047 119
8 281 273 - MARTH_orf524 Mycoplasma arthritidis 4 270 0.000000000001 25.7525 157
4 258 254 - MARTH_orf285 Mycoplasma arthritidis 3 244 0.00000000002 23.6641 146
182 260 78 - MARTH_orf520 Mycoplasma arthritidis 171 251 0.000009 32.9268 97
5 276 271 - MAG6400 Mycoplasma agalactiae 9 277 4e-17 25.0883 196
8 271 263 - MAG5280 Mycoplasma agalactiae 86 341 0.0000000000005 24.1636 160
11 279 268 - MAG1840 Mycoplasma agalactiae 17 283 0.00000000001 25.7042 148
2 272 270 - MAG2270 Mycoplasma agalactiae 3 270 0.000000004 24.0418 126
1 261 260 - MAG4360 Mycoplasma agalactiae 1 258 0.000000008 25.7353 123
1 279 278 - MAG0270 Mycoplasma agalactiae 5 272 0.000000009 22.7273 123
4 260 256 - MAG6900 Mycoplasma agalactiae 2 245 0.00000005 21.2454 117
161 275 114 - MAG4980 Mycoplasma agalactiae 152 268 0.000007 25.4237 98
1 275 274 - MCJ_002620 Mycoplasma conjunctivae 7 284 2.94273e-44 37.6344 430
3 275 272 - MCJ_005120 Mycoplasma conjunctivae 2 261 0.00000000006 24.3636 142
1 280 279 - MCJ_000890 Mycoplasma conjunctivae 1 281 0.000000002 24.9158 128
4 258 254 - MCJ_004510 Mycoplasma conjunctivae 2 241 0.000000008 23.9544 124
8 275 267 - MCAP_0732 Mycoplasma capricolum subsp. capricolum 5 270 0.000000000000002 23.8434 181
8 258 250 - MCAP_0365 Mycoplasma capricolum subsp. capricolum 7 261 0.0000000000003 24.7104 162
8 275 267 - MCAP_0834 Mycoplasma capricolum subsp. capricolum 7 272 0.0000000004 25.4417 136
1 259 258 - MYCGA6200 Mycoplasma gallisepticum 1 270 0.00000000006 24 143
1 271 270 - MYCGA5480 Mycoplasma gallisepticum 1 272 0.000000006 23.4483 125
11 262 251 - MYCGA5490 Mycoplasma gallisepticum 16 265 0.00000007 24.3542 116
4 279 275 - MG265 Mycoplasma genitalium 2 276 <1e-50 57.971 845
1 276 275 - MG263 Mycoplasma genitalium 1 286 0.000000000004 24.5283 151
160 268 108 - MG125 Mycoplasma genitalium 156 266 0.000002 28.8288 103
4 278 274 - MHP7448_0435 Mycoplasma hyopneumoniae 7448 18 297 7e-38 35.0694 375
11 258 247 - MHP7448_0277 Mycoplasma hyopneumoniae 7448 10 246 0.000000000000003 26.2745 179
10 251 241 - MHP7448_0208 Mycoplasma hyopneumoniae 7448 7 241 0.00000000003 24.031 144
8 280 272 - MHP7448_0477 Mycoplasma hyopneumoniae 7448 10 280 0.00000002 23.5495 121
6 279 273 - MHP7448_0485 Mycoplasma hyopneumoniae 7448 3 261 0.0000006 24.5552 108
4 261 257 - MHO_2360 Mycoplasma hominis 3 247 0.0000000001 24.6154 138
11 280 269 - MHO_3310 Mycoplasma hominis 17 284 0.0000004 24.0678 109
2 276 274 - MHO_4140 Mycoplasma hominis 5 264 0.000006 21.831 98
5 276 271 - MMOB0470 Mycoplasma mobile 7 278 9e-20 25.5319 218
10 250 240 - MMOB4670 Mycoplasma mobile 8 244 0.000000000000003 28.4553 178
5 282 277 - MMOB0460 Mycoplasma mobile 9 282 0.000000000000006 27.027 176
11 280 269 - MMOB1220 Mycoplasma mobile 13 280 0.0000000002 25.5319 137
5 262 257 - MMOB1410 Mycoplasma mobile 6 250 0.0000003 25.3731 110
8 258 250 - MSC_0614 Mycoplasma mycoides subsp. mycoides SC 14 268 0.0000000000002 25.3846 164
8 275 267 - MSC_0805 Mycoplasma mycoides subsp. mycoides SC 5 270 0.0000000000006 24.2215 160
8 275 267 - MSC_0073 Mycoplasma mycoides subsp. mycoides SC 7 272 0.0000000002 22.8669 139
8 279 271 - MSC_0241 Mycoplasma mycoides subsp. mycoides SC 12 288 0.00000004 22.8477 119
1 279 278 - MSC_0081 Mycoplasma mycoides subsp. mycoides SC 1 277 0.0000001 21.7993 115
1 275 274 - MYPE5190 Mycoplasma penetrans 1 267 2e-22 25.4545 243
8 275 267 - MYPE10200 Mycoplasma penetrans 6 272 1e-21 25.5474 236
4 280 276 - MYPE840 Mycoplasma penetrans 5 273 0.00000000000001 24.1259 176
8 277 269 - MYPE3170 Mycoplasma penetrans 504 771 0.0000000000006 22.2222 161
11 254 243 - MYPE8560 Mycoplasma penetrans 9 249 0.00000000005 25 144
4 261 257 - MYPE4950 Mycoplasma penetrans 3 278 0.00000007 22.1429 117
8 281 273 - MYPE4570 Mycoplasma penetrans 9 291 0.0000006 25 109
168 279 111 - Lactococcus lactis subsp. lactis KF147 143 263 0.0000000009 30.3279 135
5 278 273 - Lactococcus lactis subsp. lactis KF147 3 275 0.0000000001 22.1429 143
11 271 260 - Lactococcus lactis subsp. lactis KF147 13 265 0.0000000001 24.2857 144
3 281 278 - Lactococcus lactis subsp. lactis KF147 9 266 0.0000000001 24.8227 144
1 279 278 - Lactococcus lactis subsp. lactis KF147 1 268 4e-17 26.2069 199
4 271 267 - LIC_20006 Leptospira interrogans serovar Copenhage 11 278 0.000000006 21.5054 130
4 275 271 - MS53_0680 Mycoplasma synoviae 8 280 2e-19 26.4605 216
4 275 271 - MS53_0032 Mycoplasma synoviae 10 287 0.000000000000002 23.9437 181
2 276 274 - MS53_0564 Mycoplasma synoviae 4 267 0.000000000008 26.7606 149
65 262 197 - MS53_0503 Mycoplasma synoviae 64 245 0.00000004 24.8756 118
179 279 100 - MS53_0618 Mycoplasma synoviae 184 286 0.000001 31.7308 104
5 271 266 - Lactococcus lactis subsp. lactis KF147 2 256 0.0000000001 24.4444 143
162 279 117 - Lactococcus lactis subsp. lactis KF147 147 265 0.00000000003 30.8333 149
8 279 271 - Bacillus subtilis subsp. subtilis 4 281 3e-16 24.1135 196
8 279 271 - Bacillus subtilis subsp. subtilis 4 285 0.00000000000001 23.1579 182
8 279 271 - Bacillus subtilis subsp. subtilis 4 281 0.00000000000001 23.7589 182
8 279 271 - Bacillus subtilis subsp. subtilis 4 285 0.00000000000004 23.1579 177
1 281 280 - Bacillus subtilis subsp. subtilis 1 270 0.000000000005 23.1293 159
1 281 280 - Bacillus subtilis subsp. subtilis 1 270 0.000000000006 23.1293 158
8 276 268 - Bacillus subtilis subsp. subtilis 5 264 0.00000000001 24.9097 156
8 276 268 - Bacillus subtilis subsp. subtilis 5 264 0.00000000001 23.5507 156
8 279 271 - Bacillus subtilis subsp. subtilis 13 248 0.00000008 20.6522 123
8 279 271 - Bacillus subtilis subsp. subtilis 13 248 0.00000008 20.6522 123
5 275 270 - Mycoplasma pulmonis 9 279 8e-29 31.6364 297
1 276 275 - Mycoplasma pulmonis 4 270 0.000000000000003 24.2105 180
1 275 274 - Mycoplasma pulmonis 1 263 0.0000000002 26.3514 139
8 280 272 - Mycoplasma pulmonis 12 282 0.0000001 25.6055 114
External IDs
COG 
COG0561R
EC number 
3.1.3.-
Gene ID 
877093
GI 
13508122
GO 
General function prediction only
Home COG 
R
InterPro 
IPR000150|Cof protein
InterPro 
IPR006379|HAD-superfamily hydrolase, subfamily IIB
InterPro 
IPR013200|HAD superfamily hydrolase-like, type 3
Old MP number 
MP454
Pathway 
Metabolism
PDB homologs 
1rkq_A
PDB homologs 
1nrw_A
PDB homologs 
1nf2_A
Pfam 
PF08282
Pfam 
PF05116
Pfam 
PF00702
PID 
g1674142
RefSeq 
NP_110071.1
Swiss-Prot protein ID 
Y383_MYCPN
phylomeDB tree 
Y383_MYCPN
UniProt 
P75399
Transcription
IMAGE BROWSERS

OPERON OP441 (Genomic Overview)
Region:458600-463855

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STRING image

STRING of Mpn383STRING legend

PDB image(s)

1rkq

PDB 1rkq

1nrw

PDB 1nrw

1nf2

PDB 1nf2
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