MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene prfA (MPN361)
Name 
prfA
Stable ID 
MPN361
Location 
430628 - 431707 +
Sequence 
    1  GTGGAGTTTG ACAAGCAGTT CTTTTCTAGT GTTGAAAAGA TTGTTGAACT TGCTGAACAA
   61  CTCGAAAAGG ACTTAAATAA ACCCGATTTG ACCTTTGAAC AGATCAAAGC GATCAACAAG
  121  GAACTGAAAC ATAAACAACC CTTAGTTGTT AAATTCAAAG AATTTAAACG GCTCATAGAT
  181  CAAGCTTTGG AAGCGGAGGC CATTTTGGAA AACAACGAGC TCAAGGAGCT ACATGATGAG
  241  GCCAAAAAAG AGCTGGAACG GGTGCGCAGT GTTGTCCCTG AATACGAAGA AGCGTTAAAA
  301  CTGTTGTTAT TACCAATTGA TGAGAATAAC CAGAAAAACG TGATTGTAGA GCTTCGTCCC
  361  GCTGCTGGTG GGGATGAATC GTGCATCTTT TTAGCTGATT TATTCAATAT GTACCGCAAC
  421  TTTTGTTCTA ACAAGGGTTG AAAGTTGCAA ATTAACGAAA TGATCCCATC CAGTGTCGGG
  481  TTAAACTTCG TTTCCTTTGA AGTTAATGGT GTCGATGTGT TTGCCAAGCT CAAGTTTGAA
  541  TCTGGCGTAC ACCGGGTACA ACGCGTACCC GCTACTGAAT CCAAGGGGAG AGTACACACT
  601  TCAACCGTTA CGGTTGCTGT TTTACCACAA CTAGAAGCGG TTGAAGTTCA TATTAACCCA
  661  GCTGATCTTA GAGTAGATAC CTACCGTGCT TCGGGTGCTG GGGGTCAACA CGTTAACCGG
  721  ACTGAAAGTG CAGTGCGGAT TACCCATTTA CCAACTGGCA TAGTAGTTTC GTGTCAAGAG
  781  GGTAAATCAC AATTTACTAA CCGTGATACG GCAATGAAGA TGCTACGTGC TAAACTGTGG
  841  GAAAAAGCGC AGAACGAACA GTTATCAACC CAAGCAGGTT TGCGTAAAAG TCAGGTTGGG
  901  TCAGGTGATC GTGCCGAAAA GATCCGCACA TATAACTATC CCCAAAACCG GGTCACAGAC
  961  CACCGCATTA AACTTACCGT CAATAAGCTT AACACGATTA TTTTAGGTGA CCTTGATGAA
 1021  ATTATTGAAG CGTTGCAGGC AGATGAAAAG AAACAACAAC TAGAGAACTT TTTCAGTTAA
Download Sequence
Operon 
OP142
Operon location 
430310 - 431600
Protein (mpn361)
Name 
Peptide chain release factor 1 (RF-1)
Stable ID 
Mpn361
Molecular Weight 
39490
Isoelectric Point 
7
Localization 
Cytoplasm
Comment -
Sequence 
MEFDKQFFSSVEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFKEFKRLIDQALEAEAILENNELKELHDE
AKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRPAAGGDESCIFLADLFNMYRNFCSNKGWKLQINEMIPSSVG
LNFVSFEVNGVDVFAKLKFESGVHRVQRVPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNR
TESAVRITHLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVGSGDRAEKIRTYNYPQNRVTD
HRIKLTVNKLNTIILGDLDEIIEALQADEKKQQLENFFS
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Methylation aINkELk 37 44 K
GENE/PROTEIN prfA (Domains Overview)
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Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
1-359 TIGR00019 (IPR004373) Peptide chain release factor 1 Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006415'>'translational' == '' ? '': 'translational'; 'termination' == '' ? '': 'termination'; ('GO' == '' ? '': 'GO';:0006415)

Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005737'>'cytoplasm' == '' ? '': 'cytoplasm'; ('GO' == '' ? '': 'GO';:0005737)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'factor' == '' ? '': 'factor';'>'translation' == '' ? '': 'translation'; 'release' == '' ? '': 'release'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity';

0
8-359 PTHR11075 (n.a.) NULL 0
8-359 PTHR11075:SF9 (n.a.) NULL 0
31-358 SSF75620 (n.a.) NULL 0
66-180 SM00937 (IPR005139) Peptide chain release factor Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006415'>'translational' == '' ? '': 'translational'; 'termination' == '' ? '': 'termination'; ('GO' == '' ? '': 'GO';:0006415)

Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005737'>'cytoplasm' == '' ? '': 'cytoplasm'; ('GO' == '' ? '': 'GO';:0005737)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'factor' == '' ? '': 'factor';'>'translation' == '' ? '': 'translation'; 'release' == '' ? '': 'release'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity';

1.1e-35
68-180 PF03462 (IPR005139) Peptide chain release factor Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006415'>'translational' == '' ? '': 'translational'; 'termination' == '' ? '': 'termination'; ('GO' == '' ? '': 'GO';:0006415)

Cellular Component:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0005737'>'cytoplasm' == '' ? '': 'cytoplasm'; ('GO' == '' ? '': 'GO';:0005737)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:'factor' == '' ? '': 'factor';'>'translation' == '' ? '': 'translation'; 'release' == '' ? '': 'release'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity';

2.1e-26
212-322 PF00472 (IPR000352) Peptide chain release factor class I/class II Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006415'>'translational' == '' ? '': 'translational'; 'termination' == '' ? '': 'termination'; ('GO' == '' ? '': 'GO';:0006415)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003747'>'translation' == '' ? '': 'translation'; 'release' == '' ? '': 'release'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003747)

1.3e-36
214-287 G3DSA:3.30.160.200 (n.a.) NULL 6e-27
229-245 PS00745 (IPR000352) Peptide chain release factor class I/class II Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0006415'>'translational' == '' ? '': 'translational'; 'termination' == '' ? '': 'termination'; ('GO' == '' ? '': 'GO';:0006415)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0003747'>'translation' == '' ? '': 'translation'; 'release' == '' ? '': 'release'; 'factor' == '' ? '': 'factor'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0003747)

0
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
3 354 351 - MAG7350 Mycoplasma agalactiae 1 353 <1e-50 42.9752 749
105 350 245 - MARTH_orf295 Mycoplasma arthritidis 101 346 <1e-50 55.2419 709
108 344 236 - Caulobacter crescentus NA1000 117 355 <1e-50 39.6694 455
82 357 275 - Caulobacter crescentus NA1000 54 330 <1e-50 50.3597 747
3 354 351 - MHO_1600 Mycoplasma hominis 1 354 <1e-50 44.2577 712
7 357 350 - Lactococcus lactis subsp. lactis KF147 1 355 <1e-50 44.507 769
11 344 333 - Lactococcus lactis subsp. lactis KF147 26 359 9.99995e-41 29.7935 403
7 355 348 - Bacillus subtilis subsp. subtilis 1 352 <1e-50 43.75 783
84 344 260 - Bacillus subtilis subsp. subtilis 58 320 <1e-50 41.6357 496
7 355 348 - Bacillus subtilis subsp. subtilis 1 352 <1e-50 43.75 783
84 344 260 - Bacillus subtilis subsp. subtilis 58 320 <1e-50 41.6357 496
16 344 328 - b2891 Escherichia coli 32 359 <1e-50 32.5373 452
105 354 249 - b1211 Escherichia coli 102 353 <1e-50 47.619 658
223 286 63 - b0236 Escherichia coli 71 133 0.0000000002 50 145
1 359 358 - MG258 Mycoplasma genitalium 1 359 <1e-50 77.9944 1551
84 354 270 - Rv1299 Mycobacterium tuberculosis 77 354 <1e-50 43.1655 612
8 344 336 - Rv3105c Mycobacterium tuberculosis 16 360 3e-35 29.3103 359
20 354 334 - MCAP_0144 Mycoplasma capricolum subsp. capricolum 18 355 <1e-50 48.5207 831
3 354 351 - MS53_0183 Mycoplasma synoviae 1 354 <1e-50 44.9438 684
81 357 276 - MHP7448_0139 Mycoplasma hyopneumoniae 7448 81 358 <1e-50 51.0714 730
81 354 273 - MMOB1900 Mycoplasma mobile 80 353 <1e-50 50.8961 666
20 354 334 - MSC_0150 Mycoplasma mycoides subsp. mycoides SC 18 355 <1e-50 48.2249 816
211 285 74 - LIC_11757 Leptospira interrogans serovar Copenhage 16 87 0.0000002 40.7895 119
97 344 247 - LIC_10470 Leptospira interrogans serovar Copenhage 113 362 1e-37 37.1094 378
11 354 343 - LIC_10102 Leptospira interrogans serovar Copenhage 5 348 <1e-50 41.4493 726
1 354 353 - MYCGA1370 Mycoplasma gallisepticum 1 354 <1e-50 56.7797 1088
1 345 344 - MYPE650 Mycoplasma penetrans 1 345 <1e-50 56.5217 1049
3 354 351 - Mycoplasma pulmonis 1 354 <1e-50 42.6966 738
External IDs
COG 
COG0216J
Gene ID 
877356
GI 
13508100
GO 
Translation, ribosomal structure and biogenesis
Home COG 
J
InterPro 
IPR004373|Peptide chain release factor 1
InterPro 
IPR012086|Protein chain release factor, RF-1/RF-2
InterPro 
IPR001425|Bacterial rhodopsin
InterPro 
IPR005139|PCRF
InterPro 
IPR000352|Class I peptide chain release factor
Old MP number 
MP475
Pathway 
Translation
PDB homologs 
1mi6_A
PDB homologs 
1ml5_Z
PDB homologs 
1gqe_A
Pfam 
PF03462
Pfam 
PF00472
PID 
g1674166
RefSeq 
NP_110049.1
Swiss-Prot protein ID 
RF1_MYCPN
phylomeDB tree 
RF1_MYCPN
UniProt 
P75420
Transcription
IMAGE BROWSERS

OPERON OP142 (Genomic Overview)
Region:430310-431600

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STRING image

STRING of Mpn361STRING legend

PDB image(s)

1mi6

PDB 1mi6

1ml5

PDB 1ml5

1gqe

PDB 1gqe
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