MyMpn
The Mycoplasma pneumoniae database
 
e.g Mpn001 or dnaN or polymerase
Gene nrdF (MPN322)
Name 
nrdF
Stable ID 
MPN322
Location 
382018 - 383037 +
Sequence 
    1  ATGGCTAACA CAAAAAAATA CTTTTTAGAA TCAGTTTCTC CCTTAGAATA TGCACAAAAA
   61  AAGTTTCAGG GCAACTTGCG CTCGGTTAAC TGAAACCTAG TGGATGATGA GAAGGATCTG
  121  GAAGTGTGAA ACCGGATCAC GCAAAACTTC TGGTTACCAG AAAAGATTCC GGTATCCAAT
  181  GACATTCCAT CATGAAAGCA GCTGTCTAAG GAATGGCAGG ATTTAATTAC CAAAACCTTT
  241  ACGGGGTTAA CATTACTTGA CACCATCCAA GCTACCATTG GTGACATTAA GCAAATTGAC
  301  TATGCTTTAA CAGATCACGA GCAGGTAATT TACGCCAACT TTGCCTTTAT GGTGGGGGTA
  361  CACGCGCGCT CTTATGGCAC CATCTTTTCC ACTCTGTGTA CTTCAGAACA AATTACTGAA
  421  GCACATGAAT GGGTGGTGAA AACCGAAAGC TTGCAAAAGC GCGCTAAGGC TTTAATTCCC
  481  TATTACACCG GGAAAGACCC ATTAAAGTCT AAGGTAGCAG CCGCTTTAAT GCCCGGGTTC
  541  TTACTGTATG GTGGGTTTTA TTTACCGTTT TACCTCTCCT CGCGTAAACA GCTACCCAAC
  601  ACTTCGGACA TTATTCGCTT AATTTTGCGC GATAAGGTAA TCCATAACTA TTACAGTGGG
  661  TATAAGTTCC AGCGTAAAGT GGAAAAGATG TCCAAGGAAA AACAGGCTGA GATGAAACGG
  721  TTTGTCTTTG ATTTAATGTA CGAACTGATT GAGTTGGAAA AGGCATACCT CAAGGAACTG
  781  TATGAAGGGT TTGGGATTGT AGAAGATGCC ATTAAATTCA GTATTTATAA CGCTGGTAAG
  841  TTTTTGCAAA ACTTAGGGTA TGACTCACCG TTTACAGAAG AAGAAACGCG GATTAAACCA
  901  GAAATTTTTG CCCAATTGTC AGCCAGAGCC GATGAAAACC ACGATTTCTT TTCTGGTAAT
  961  GGTTCGTCAT ATGTGATGGG AATTAGTGAA GAGACCGAAG ATAAGGATTG AGACTTTTAA
Download Sequence
Operon 
OP127
Operon location 
380638 - 385680
Protein (mpn322)
Name 
Ribonucleoside-diphosphate reductase subunit beta (EC 1.17.4.1) (Ribonucleotide reductase small subunit)
Stable ID 
Mpn322
Molecular Weight 
37290
Isoelectric Point 
5
Localization 
Cytoplasm
Comment -
Sequence 
MANTKKYFLESVSPLEYAQKKFQGNLRSVNWNLVDDEKDLEVWNRITQNFWLPEKIPVSNDIPSWKQLSKEWQDLITKTF
TGLTLLDTIQATIGDIKQIDYALTDHEQVIYANFAFMVGVHARSYGTIFSTLCTSEQITEAHEWVVKTESLQKRAKALIP
YYTGKDPLKSKVAAALMPGFLLYGGFYLPFYLSSRKQLPNTSDIIRLILRDKVIHNYYSGYKFQRKVEKMSKEKQAEMKR
FVFDLMYELIELEKAYLKELYEGFGIVEDAIKFSIYNAGKFLQNLGYDSPFTEEETRIKPEIFAQLSARADENHDFFSGN
GSSYVMGISEETEDKDWDF
Post translational modifications
Modification Modified sequence Relative start Relative end Amino acid
Methylation ikPEIFAQLSAR 298 310 K
Oxidation ADENHDFFSGNGSSYVmGISEETEDKDWDF 310 340 M
GENE/PROTEIN nrdF (Domains Overview)
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 ExportIMG
Domains (InterProScan)
Location (aa) Name (InterPro ID) Description GO terms Sequence Evalue
22-295 G3DSA:1.10.620.20 (IPR012348) Ribonucleotide reductase-related Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0055114'>'oxidation' == '' ? '': 'oxidation'; 'reduction' == '' ? '': 'reduction'; ('GO' == '' ? '': 'GO';:0055114)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016491'>'oxidoreductase' == '' ? '': 'oxidoreductase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016491)

0
22-336 PTHR23409:SF5 (n.a.) NULL 0
22-336 PTHR23409 (IPR000358) Ribonucleotide reductase Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0009186'>'deoxyribonucleoside' == '' ? '': 'deoxyribonucleoside'; 'diphosphate' == '' ? '': 'diphosphate'; 'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0009186) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0055114'>'oxidation' == '' ? '': 'oxidation'; 'reduction' == '' ? '': 'reduction'; ('GO' == '' ? '': 'GO';:0055114)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004748'>'ribonucleoside' == '' ? '': 'ribonucleoside';-'diphosphate' == '' ? '': 'diphosphate'; 'reductase' == '' ? '': 'reductase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004748)

0
22-339 SSF47240 (IPR009078) Ferritin/ribonucleotide reductase-like Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0055114'>'oxidation' == '' ? '': 'oxidation'; 'reduction' == '' ? '': 'reduction'; ('GO' == '' ? '': 'GO';:0055114)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0016491'>'oxidoreductase' == '' ? '': 'oxidoreductase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0016491) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0046914'>'transition' == '' ? '': 'transition'; 'metal' == '' ? '': 'metal'; 'ion' == '' ? '': 'ion'; 'binding' == '' ? '': 'binding'; ('GO' == '' ? '': 'GO';:0046914)

0
29-296 PF00268 (IPR000358) Ribonucleotide reductase Biological Process:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0009186'>'deoxyribonucleoside' == '' ? '': 'deoxyribonucleoside'; 'diphosphate' == '' ? '': 'diphosphate'; 'metabolic' == '' ? '': 'metabolic'; 'process' == '' ? '': 'process'; ('GO' == '' ? '': 'GO';:0009186) <'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0055114'>'oxidation' == '' ? '': 'oxidation'; 'reduction' == '' ? '': 'reduction'; ('GO' == '' ? '': 'GO';:0055114)

Molecular Function:
<'A' == '' ? '': 'A'; 'class' == '' ? '': 'class';=''result' == '' ? '': 'result';' 'target' == '' ? '': 'target';='_'blank' == '' ? '': 'blank';' 'href' == '' ? '': 'href';=''http' == '' ? '': 'http';://'amigo' == '' ? '': 'amigo';.'geneontology' == '' ? '': 'geneontology';.'org' == '' ? '': 'org';/'cgi' == '' ? '': 'cgi';-'bin' == '' ? '': 'bin';/'amigo' == '' ? '': 'amigo';/'term' == '' ? '': 'term';-'details' == '' ? '': 'details';.'cgi' == '' ? '': 'cgi';?'term' == '' ? '': 'term';='GO' == '' ? '': 'GO';:0004748'>'ribonucleoside' == '' ? '': 'ribonucleoside';-'diphosphate' == '' ? '': 'diphosphate'; 'reductase' == '' ? '': 'reductase'; 'activity' == '' ? '': 'activity'; ('GO' == '' ? '': 'GO';:0004748)

1.49939e-43
Protein Homology (BLASTP results)
Protein Start Protein End Hit Size Orthologous Organism Orthologous Start Orthologous End Evalue Identity Score Alignment
6 328 322 - MCJ_000100 Mycoplasma conjunctivae 11 333 <1e-50 70.2786 1233
28 338 310 - Lactococcus lactis subsp. lactis KF147 15 324 <1e-50 33.4405 491
28 339 311 - Bacillus subtilis subsp. subtilis 12 327 3e-38 31.5625 386
28 339 311 - Bacillus subtilis subsp. subtilis 7 322 1.99993e-41 33.4375 413
28 339 311 - Bacillus subtilis subsp. subtilis 7 322 1.99993e-41 33.4375 413
26 339 313 - b2676 Escherichia coli 6 319 <1e-50 46.4968 781
2 339 337 - MG229 Mycoplasma genitalium 3 340 <1e-50 81.0651 1448
50 215 165 - b2235 Escherichia coli 48 242 0.0000005 23.3503 115
21 339 318 - Rv1981c Mycobacterium tuberculosis 4 322 <1e-50 42.9467 740
1 339 338 - MCAP_0099 Mycoplasma capricolum subsp. capricolum 1 339 <1e-50 74.0413 1378
1 339 338 - MS53_0399 Mycoplasma synoviae 1 339 <1e-50 66.9617 1246
26 339 313 - MHP7448_0223 Mycoplasma hyopneumoniae 7448 1 314 <1e-50 68.7898 1193
18 339 321 - Rv3048c Mycobacterium tuberculosis 3 324 <1e-50 46.5839 795
1 339 338 - MSC_0855 Mycoplasma mycoides subsp. mycoides SC 1 339 <1e-50 73.4513 1364
1 339 338 - MYPE870 Mycoplasma penetrans 1 339 <1e-50 67.2566 1251
5 339 334 - Mycoplasma pulmonis 7 341 <1e-50 71.6418 1293
1 339 338 - MYCGA0450 Mycoplasma gallisepticum 1 339 <1e-50 64.3068 1207
External IDs
COG 
COG0208F
EC number 
1.17.4.1
Gene ID 
876942
GI 
13508061
GO 
Nucleotide transport and metabolism
Home COG 
F
InterPro 
IPR012348|Ribonucleotide reductase-related
InterPro 
IPR009078|Ferritin/ribonucleotide reductase-like
InterPro 
IPR000358|Ribonucleotide reductase
Old MP number 
MP514
Pathway 
Metabolism nucleotides
PDB homologs 
1h0o_A
PDB homologs 
1h0n_A
PDB homologs 
1xsm_
PDB homologs 
1MRR-A
Pfam 
PF00268
PID 
g1674208
RefSeq 
NP_110010.1
Swiss-Prot protein ID 
RIR2_MYCPN
phylomeDB tree 
RIR2_MYCPN
UniProt 
P75461
Transcription
IMAGE BROWSERS

OPERON OP127 (Genomic Overview)
Region:380638-385680

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STRING image

STRING of Mpn322STRING legend

PDB image(s)

1h0o

PDB 1h0o

1h0n

PDB 1h0n

1xsm

PDB 1xsm

1MRR

PDB 1MRR
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